JosΓ© Manuel Robles Aguilar's Avatar

JosΓ© Manuel Robles Aguilar

@manuroag

AI and Physics to address complex challenges within the biological sciences. πŸ§¬πŸ’» manuroag.github.io M.Sc. in Statistical Physics (open to PhD positions)

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17.02.2025
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Latest posts by JosΓ© Manuel Robles Aguilar @manuroag

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Applications open for the CENTURI Hackathon for Quantitative Biology 2026!

πŸ§¬πŸ’» Join us in Marseille (June 5–7) for a weekend of coding at the interface of CS & life sciences.

πŸ“Apply by May 6: centuri-livingsystems.org/application-...

Event Details: centuri-livingsystems.org/hackathon-20...

09.03.2026 13:47 πŸ‘ 7 πŸ” 5 πŸ’¬ 0 πŸ“Œ 0
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Registration is now open for the 4th SIMPLAIX Workshop!

πŸ“… 6–8 May 2026
πŸ“ Studio Villa Bosch, Heidelberg

Three days of cutting-edge discussions at the intersection of machine learning and multiscale molecular modeling.

πŸ”— Register now: simplaix-workshop2026.h-its.org

#SIMPLAIX26

04.03.2026 08:19 πŸ‘ 7 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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#ChooseFrance | As part of the French Strategy in #AI, the #ChooseFrance - @cnrs.fr AI Rising Talents program supports top early-career AI researchers in leading a 4-year research program and team. Apply now with the link below!
➑️ www.ins2i.cnrs.fr/fr/cnrsinfo/...

13.02.2026 15:30 πŸ‘ 1 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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Assistant Professor (Tenure Track) of Computational Immunology

We have an open Assistant Professor position (tenure track) @ethz.ch in Computational Immunology - ethz.ch/en/the-eth-z... Please apply / share!

20.02.2026 16:12 πŸ‘ 18 πŸ” 17 πŸ’¬ 1 πŸ“Œ 0
Vacancies

My university (Chalmers University of Technology in πŸ‡ΈπŸ‡ͺ) is recruiting an assistant professor in data-driven cell & molecular biology, funded by the DDLS program @scilifelab.se #chemsky #facultychemjobs

The position comes with a nice start-up package

www.chalmers.se/en/about-cha...

19.02.2026 14:37 πŸ‘ 11 πŸ” 6 πŸ’¬ 1 πŸ“Œ 0
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The Issue β€œGood Practices in AI: Democratization of Open Science” is out. Honored to serve as Guest Editor and work with outstanding colleagues @filipmiljkovic.bsky.social @rociomer.bsky.social @wpwalters.bsky.social
πŸ‘‰
www.sciencedirect.com/special-issu...

#AI #OpenScience #Chemoinformatics

15.02.2026 15:16 πŸ‘ 4 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

Many condensates can be described as active soft materials that generate molecular fluxes. Here we develop a new #nonequilibrium approach (TRACE) to study molecular transport through condensates! Work led by Yashraj Wani!!

www.biorxiv.org/content/10.6...

07.02.2026 17:31 πŸ‘ 18 πŸ” 7 πŸ’¬ 1 πŸ“Œ 0

Our team at Google DeepMind is hiring for multiple roles in AI+materials. πŸš€

Weβ€˜re pursuing an ambitious research program in materials and are looking for the worldβ€˜s best:

- semiconductor experts
- ml+materials researchers
- lab automation engineers

The vibes are great, join us!

30.01.2026 19:17 πŸ‘ 26 πŸ” 10 πŸ’¬ 2 πŸ“Œ 1
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Learn more about the basic physical principles that underlie the behaviour of living cells in the EMBO Workshop "#Physics of Cells: PhysCell2026" in Egmond aan Zee, Netherlands, 7–11 September 2026.

Deadline: 8 May

https://meetings.embo.org/event/26-physcell
#EMBOphysCell26 #meeting #EMBOevents πŸ§ͺ

26.01.2026 06:15 πŸ‘ 20 πŸ” 8 πŸ’¬ 0 πŸ“Œ 0
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I'm excited to open the new year by sharing a new perspective paper.

I give a informal outline of MD and how it can interact with Generative AI. Then, I discuss how far the field has come since the seminal contributions, such as Boltzmann Generators, and what is still missing

16.01.2026 10:25 πŸ‘ 19 πŸ” 5 πŸ’¬ 1 πŸ“Œ 1

Please apply (or encourage your grad students to apply) to our awesome funded summer program by January 15th!

12.01.2026 14:54 πŸ‘ 20 πŸ” 14 πŸ’¬ 0 πŸ“Œ 0
R for Biochemists 101
2 February 2026
Register online

R for Biochemists 101 2 February 2026 Register online

Sign up for the Biochemical Society’s original R course, R101! Suited for beginners, this course will teach you how to get data into R, and manipulating and visualising this using various methods. πŸ§ͺ https://ow.ly/O0ga50XNCuX

05.01.2026 15:00 πŸ‘ 5 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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I’m happy to share that I have successfully defended my Master’s thesis, "AI-driven Prediction of Circular Dichroism Spectra of Proteins," at Cinvestav! πŸ§¬πŸŽ“πŸ₯³

In this research, I integrated Deep Bayesian Neural Networks (BNNs) into the KCD method, increasing the average prediction accuracy by 40%. πŸ“ˆ

22.12.2025 15:52 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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7 random unsolicited tips for students and early career researchers You might not want to hear them, but here they are anyway.

More unsolicited advice for early career researchers:

8. Just do it!

Just keep moving, keep taking initiative, and good things will follow. It’s the only sensible way to spend our limited time on this planet and value life. kamounlab.medium.com/7-random-uns...

13.12.2025 13:36 πŸ‘ 27 πŸ” 7 πŸ’¬ 1 πŸ“Œ 0
The Institut d'Γ‰tudes Scientifiques (IESC), on the coast of Corsica.

The Institut d'Γ‰tudes Scientifiques (IESC), on the coast of Corsica.

I'm delighted to announce that the Interdisciplinary Challenges (IntCha) meeting is returning in April 2026! Abstract submission is now open.
We encourage young scientists working at the interface between biology and physics to join us at the IESC in Corsica. Website here: intcha26.sciencesconf.org

17.10.2025 11:11 πŸ‘ 10 πŸ” 6 πŸ’¬ 1 πŸ“Œ 1

Wow, fantastic work! πŸ‘πŸ½

06.12.2025 14:37 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Want to learn about how we use computational approaches at different scales to study biomolecular condensates?
Check out our latest review, out in Advances in Physics X
@juliamaristany.bsky.social @alinaemelianova.bsky.social
@rcollepardo.bsky.social

www.tandfonline.com/doi/epdf/10....

05.12.2025 15:01 πŸ‘ 32 πŸ” 12 πŸ’¬ 1 πŸ“Œ 0
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www.icbp2026.org

01.12.2025 17:36 πŸ‘ 20 πŸ” 13 πŸ’¬ 1 πŸ“Œ 0
MΓ©tiers de la physique

Vous faites des Γ©tudes de physique mais vous ne savez pas quel mΓ©tier faire ? J'ai rΓ©digΓ© pour la SociΓ©tΓ© franΓ§aise de physique @sfp-physique.bsky.social une description de nombreux mΓ©tiers accessibles, Γ  travers les tΓ©moignages de celles et ceux qui les exercent.
www.metiersdelaphysique.fr

01.12.2025 09:01 πŸ‘ 35 πŸ” 21 πŸ’¬ 0 πŸ“Œ 5
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1/5We are entering a new era of molecular design, with broad applications in medicine, biotechnology, and materials science. We introduce the Key-Cutting Machine (KCM) – a novel optimization-based platform that leverages structure prediction to achieve precise backbone geometriesβ€”all on a single GPU

29.01.2025 18:45 πŸ‘ 4 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0

In case you're still looking for a gift idea for your PhD students, I made a tutorial on how to sew a tote bag in a fabric poster. It's in french but I'm sure you're all smart enough to get it.

22.11.2025 17:41 πŸ‘ 10 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0

Magnifique! Un bon cadeau pour mon directeur aussi haha :)

23.11.2025 22:24 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Check the list of confirmed speakers for the MDDB Conference and apply to be part of this excellent lineup ➑️ mddbr.eu/conference/

Present your work, connect with leading experts from the community, and be part of the discussions shaping the future of MD research!

#MDDB #FAIRdata

20.11.2025 10:43 πŸ‘ 10 πŸ” 5 πŸ’¬ 1 πŸ“Œ 0
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Struggling to get your head around some fundamental techniques in biochemistry or wondering where to start developing your knowledge? Have a look at our easy-to-follow Beginner's Guide series in The Biochemist Journal for a wide variety of guides! πŸ§ͺ buff.ly/ZO4zyU4

18.11.2025 14:03 πŸ‘ 11 πŸ” 7 πŸ’¬ 0 πŸ“Œ 2
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AI in Protein Design: Hype vs. Reality Explained by David Baker In this GEN interview, Nobel Laureate David Baker, PhD, emphasizes that designing proteins from scratch is reality and unpacks what's needed for AI to transform medicine.

AI in Protein Design: Hype vs. Reality Explained by David Baker
In this GEN interview, he emphasizes that designing new proteins from scratch is now a reality. Whether AI transforms medicine will require improving our understanding of biology's complexity

02.11.2025 17:34 πŸ‘ 13 πŸ” 8 πŸ’¬ 0 πŸ“Œ 2
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The latest @livecomsjournal.bsky.social tutorial "Molecular Dynamics: From Basics to Application" by Vollmers, Chen et al is out now! doi.org/10.33011/liv...

It includes comprehensive MD tutorials in GROMACS, covering forcefields, thermodynamic ensembles, long-range electrostatics and much more!

09.09.2025 12:19 πŸ‘ 29 πŸ” 10 πŸ’¬ 1 πŸ“Œ 1
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In the latest @livecomsjournal.bsky.social
perpetual review, Cavender et al overview NMR and crystallographic experimental datasets that can be used to benchmark protein force fields, including best practices for setup and analysis of simulations!:
livecomsjournal.org/index.php/li...

#compchem

28.10.2025 15:35 πŸ‘ 19 πŸ” 7 πŸ’¬ 2 πŸ“Œ 2
Screenshot of the article header from the European Journal for Philosophy of Science titled β€œExperiment and the pursuit of ugly models” by Martin King. The header indicates it is a paper in philosophy of the natural sciences. The DOI is https://doi.org/10.1007/s13194-025-00692-y

Screenshot of the article header from the European Journal for Philosophy of Science titled β€œExperiment and the pursuit of ugly models” by Martin King. The header indicates it is a paper in philosophy of the natural sciences. The DOI is https://doi.org/10.1007/s13194-025-00692-y

Physicists have long been enamored with β€œbeautiful” modelsβ€”but this seems to have changed in high-energy physics. In his new paper, Martin King argues that experimental contexts strongly determine the pursuitworthiness of β€œugly models” πŸ‘‡πŸ“ƒ link.springer.com/article/10.1... #philsci #philphysics #HPS

15.10.2025 15:37 πŸ‘ 30 πŸ” 10 πŸ’¬ 1 πŸ“Œ 0
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Incredible science and collaboration at the 13th Symposium on Structural Proteomics at @humantechnopole.bsky.social this week! πŸ§¬πŸ’»πŸ₯Ό

Great talks, great people, great future for the field. Honored to have been a part of it. See you all at the next one!

#StructuralProteomics #MassSpectrometry #Physics

11.10.2025 07:02 πŸ‘ 4 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0