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Tom Ellis

@proftomellis

Synthetic Biology & Synthetic Genomics @ Imperial College London and the Sanger Institute. Bilingual in English and DNA. Views are either my own or my microbes'

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07.09.2023
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Latest posts by Tom Ellis @proftomellis

Come and work with my research group on polymer-based synthetic cells. Apply now for these exciting postdoc positions!

12.03.2026 13:26 πŸ‘ 1 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
Framework for microbiome-inspired functional synthetic communities

Framework for microbiome-inspired functional synthetic communities

One of the biggest challenges in microbial biotechnology? Unlocking the potential of non-model microbes and synthetic communities! Glad to share our review @sonjablasche.bsky.social @simonemozzachiodi.bsky.social @kiranrpatil.bsky.social @cambridgebiosci.bsky.social🧡(1/7) doi.org/10.1016/j.co...

10.03.2026 15:06 πŸ‘ 56 πŸ” 28 πŸ’¬ 3 πŸ“Œ 2
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Excited to have Volker Sieber from TU Munich and others join me in Thailand for the 2026 SynBio/Biocatalysis Symposium at Vidyasirimedhi Institute of Science and Technology (VISTEC) πŸ‡ΉπŸ‡­ Thanks to Pimchai Chaiyen and her team for organising these two days of cutting edge science and good food.

10.03.2026 02:19 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Ultrafast-relaxing and photopolymerizable PEG hydrogels enable viscoelasticity-mediated cell remodeling in synthetic matrices Photopolymerizable BELA hydrogels combine dynamic boronate ester and elastic dithiolane-ene crosslinks to achieve ultrafast stress relaxation and tunable viscoelasticity. By adjusting formulation and ...

Latest issue of curated #engineeredlivingmaterials feed:
biomed.news/bims-enlima/...

via @biomednews.bsky.social | #livingmaterials #ELMs

includes research on: cell remodeling in synthetic matrices, designing self-healing, printable, and tough conductive hydrogels, matter and microbes & more πŸ§ͺ

09.03.2026 09:51 πŸ‘ 1 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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Ancient co-option of LTR retrotransposons as yeast centromeres - Nature Evolutionarily related β€˜proto-point’ centromeres providing resolution to the evolutionary origins of point centromeres are identified in yeast, and comparison shows they evolved in an ancestor with re...

Our paper is now out in Nature:

β€œAncient co-option of LTR retrotransposons as yeast centromeres”

www.nature.com/articles/s41...

A short thread on how retrotransposons helped give rise to yeast point centromeres.

1/14

18.02.2026 16:03 πŸ‘ 227 πŸ” 115 πŸ’¬ 8 πŸ“Œ 10
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Slowpoke: An Automated Golden Gate Cloning Workflow for Opentrons OT-2 and Flex In synthetic biology, DNA assembly is a routine process where increasing demands for standardization, high-throughput capacity, and error-free execution are driving the development of accessible, auto...

πŸ€– Announcement for Opentrons users - OT-2 & Flex πŸ€–
We developed Slowpoke, an open-source, automated Golden Gate cloning tool with Fankang Meng & @proftomellis.bsky.social at @imperialcollegeldn.bsky.social
Flex-optimisation by @gregorybatt.bsky.social at @pasteur.fr
πŸ‘‰ pubs.acs.org/doi/10.1021/...

12.02.2026 22:57 πŸ‘ 5 πŸ” 6 πŸ’¬ 0 πŸ“Œ 0

A toolkit for programmable transcriptional engineering across eukaryotic kingdoms https://www.biorxiv.org/content/10.64898/2026.02.10.705154v1

12.02.2026 05:02 πŸ‘ 5 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
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RFK Jr. Questions Efficacy Of Skin WASHINGTONβ€”In a firm dismissal of decades of scientific research and real-world data on the organ’s benefits and safety, Health and Human Services Secretary Robert F. Kennedy Jr. publicly questioned t...

β€œEverything we know about skin has been learned from so-called scientific studies funded by large corporations who have a financial stake in keeping our musculature covered in an unnecessary layer of man-made flesh,” said Health and Human Services Secretary Robert F. Kennedy Jr.

05.02.2026 01:15 πŸ‘ 2004 πŸ” 257 πŸ’¬ 61 πŸ“Œ 25

Does the noncoding genome actually carry more genetic information than coding seqs? Motivated by this question we mutated every bp in the 10kb MYC locus. Results are even more exciting: Decoding the MYC locus reveals a druggable ultraconserved RNA element www.biorxiv.org/content/10.6...

31.01.2026 01:13 πŸ‘ 128 πŸ” 47 πŸ’¬ 4 πŸ“Œ 6
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POV: Your cells died again! πŸ˜…

Occupational safety office, please close your eyes 🫣

#lablaughs #memesky #academicsky

31.01.2026 14:09 πŸ‘ 6 πŸ” 2 πŸ’¬ 2 πŸ“Œ 0

Any bio artists out here? I’m interested in commissioning 1-2 pieces, leaning more towards the art side but love stuff that is science-inspired... DM me if you're interested!

27.01.2026 21:42 πŸ‘ 24 πŸ” 3 πŸ’¬ 19 πŸ“Œ 0
BBC Audio | Start the Week | Biology, technology and the future Adam Rutherford asks what it might mean if we can build human bodies and minds.

Enjoyed listening to @adrianwoolfson.bsky.social on BBC 4 this week talking about synthetic biology at genome scale and what kind of step-change in capabilities are happening this decade. Interesting debate on the value of full redesign of genomes, versus iterative work. www.bbc.com/audio/play/m...

28.01.2026 04:28 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 1
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Excited for the first LSN of 2026✨ See you there!
events.humanitix.com/london-synbi...

26.01.2026 22:38 πŸ‘ 0 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

Looking forward to my first zoom call with an AI author trying to persuade me that he's a real scientist so he can post to ArXiv.

27.01.2026 05:47 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Canada Impact+ Research Training Awards The Canada Impact+ Research Training Awards are a one-time initiative designed to recruit international or returning Canadian students and postdoctoral researchers to Canada. These awards support the recruitment of doctoral students and postdoctoral researchers in priority areas, helping build capacity, strengthen the research ecosystem and enhance Canada’s global competitiveness.

Please πŸ”

My group at UBC received an allocation from the school to apply for the Canada Impact+ Training Awards (postdoc). Everything is moving fast but please email me in 48 hours with a CV if you are outside Canada and interested😎
Yachie lab: yachie-lab.org
sshrc-crsh.canada.ca/en/funding/o...

26.01.2026 05:14 πŸ‘ 2 πŸ” 8 πŸ’¬ 1 πŸ“Œ 0

I wrote a guide on constructive peer review. This is a polished version of an internal guide I had for my group. Of course, constructive feedback is welcome, peers!
deboer.bme.ubc.ca/2025/12/09/g...

09.12.2025 18:38 πŸ‘ 14 πŸ” 12 πŸ’¬ 1 πŸ“Œ 2

I think we are reaching a point in time where believe first and doubt second, will be flipped to doubt first and believe second - and that mindset transition is going to have a painful hit on online life and society in general. Depressing. #iwanttobelieve

21.01.2026 05:15 πŸ‘ 5 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Which is worse - believing everything online is fake or believing everything online is real?

21.01.2026 05:13 πŸ‘ 3 πŸ” 0 πŸ’¬ 4 πŸ“Œ 0
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A genetically encoded device for transcriptome storage in mammalian cells Understanding how cells make decisions over time requires the ability to link past molecular states to future phenotypic outcomes. We present TimeVault, a genetically encoded system that records and s...

So cool - someone finally hacked 'the vault'.
www.science.org/doi/10.1126/...

16.01.2026 13:10 πŸ‘ 55 πŸ” 17 πŸ’¬ 1 πŸ“Œ 0
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Disney Geneticists Debut New Child Stars

14.01.2026 18:01 πŸ‘ 633 πŸ” 75 πŸ’¬ 10 πŸ“Œ 3

they are all so humble

15.01.2026 16:22 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Overall we found genetic engineering and coculturing strategies possible in all strains, but with some being better than others. No single strain wins out as best for everything which is a shame, but future strain engineering may change this. Watch this space. πŸ‘€

14.01.2026 09:53 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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And in a final bit of fun, they then showed how different engineered strains of BC-producing bacteria can weld their materials together in a patchwork form to create some interesting looking materials.

14.01.2026 09:53 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Stacey and Katie then went further and tested how the different bacteria can co-culture with engineered E.coli cells and engineered yeast cells, testing at different temperatures and assessing all sorts of metrics.

14.01.2026 09:53 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Stacey, Katie and Maria tested out genetic engineering using a modular SynBio toolkit (KTK) in 4 widely-used species of Komagataeibacter and compared successes and failures.

14.01.2026 09:53 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

But different labs use different bacteria species due to historic reasons and whether engineering done in one species works in another is not clear. In this work we sought to address this through coordinated experiments in multiple labs.

14.01.2026 09:53 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

What's this one about? It's about engineering different bacteria. We and many other labs around the world engineer and use kombucha-derived bacteria (Komagataeibacter) to make the bacterial nanocellulose fibres and hydrogels that form the bulk of new materials for dozens of applications areas.

14.01.2026 09:53 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

New Engineered Living Materials #ELMs preprint up on BioRxiv #SynBio from our group in collaboration with the Hub for Biotechnology in the Built Environment at Northumbria University and with some help from CSIC, Madrid.

14.01.2026 09:49 πŸ‘ 5 πŸ” 4 πŸ’¬ 1 πŸ“Œ 0
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HAPPY HOLIDAYS TO ALL OF YOU!πŸŽ„βœ¨

19.12.2025 18:08 πŸ‘ 339 πŸ” 64 πŸ’¬ 4 πŸ“Œ 14
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Engineered symbiont biosensor maps micron-scale sugar gradients in the honeybee gut The honeybee gut microbiota plays a key role in shaping host health and susceptibility to disease. Yet, the nutrient environment it experiences within the gut remains poorly characterized. In particul...

New preprint! 🐝 We engineered a bacterial biosensor to reveal micron-scale arabinose gradients in the honeybee gut. Congratulations to Audam and all co-authors. Great collaboration with @pengellab.bsky.social as part of the NCCR Microbiomes at @fbm-unil.bsky.social
www.biorxiv.org/content/10.1...

17.12.2025 09:14 πŸ‘ 21 πŸ” 10 πŸ’¬ 0 πŸ“Œ 0