From great collaborations come great things. Excited to share Segger, the solution to segmentation of spatial transcriptomics (ST) data, with the @steglelab.bsky.social and @moritzgerstung.bsky.social labs, spearheaded by the great Andrew Moorman and Elyas Heidari www.biorxiv.org/content/10.1...
Segger logo
Message passing intuition behind the segger’s link-prediction model and the network architecture
1/ New preprint! 🍳
@elihei.bsky.social and our team at @embl.org , @dkfz.bsky.social, and @mskcancercenter.bsky.social built #segger - a fast, accurate cell segmentation tool for spatial transcriptomics that assigns transcripts to their cell origins!
doi.org/10.1101/2025...
Single-cell RNA sequencing of immune cells for over 1,000 people age 18-97 years. A clock of our immune system aging. Tells us about an individual's response to infection, vaccination, Long Covid. Towards an immunome.
www.nature.com/articles/s43...
It is important at this pivotal moment to @standupforscience.bsky.social. Looking forward to sharing my thoughts on why this should be a national priority at tomorrow’s rally in SF:
Looking forward to celebrating 80 years of federally funded science, technology and innovation @standupforscience.bsky.social SF, March 7, Civic Center, 1-3 pm 🧪 🧫 🧬
@thejohnnyyu.bsky.social, @therealnima.bsky.social, and I, are excited to tell you about Tahoe-100M! The largest publicly available single-cell dataset that measures the effect of 1200 genes on 50 cell line models. The Vevo team has outdone itself. #Tahoe100M www.biorxiv.org/content/10.1...
Before we pull out the champagne to ring in the new year, we're celebrating 2024 on the #TranslatingProteomics podcast by highlighting 3 our favorite proteomics publications from the year!
www.nautilus.bio/blog/transla...
#Proteomics #Science #Research #Proteome #Biology #UnleashTheProteome
I just wish this cartoon I drew 10+ years ago wasn't so relevant today...
Here's a fun paper I wrote on how to make and use science comics. Why? Comic/cartoon art is a way of lowering the 'energy barrier' to communicating complex ideas. And comics can be used in many ways to help promote better #scicomm @biodataganache.bsky.social
journals.plos.org/ploscompbiol...
By popular demand, I have updated our starter pack in Stats, ML & Omics. Let me know if you'd like to be added. #ML #AI #singlecell #spatial #omics #statistics
go.bsky.app/73rcuJn
Timescales in Cell Biology #Cell
PDF download:
www.cell.com/cell/pdf/S00...
🎨 In case anyone need…
The NIH BioArt Source is an awesome library of *free* professionally drawn illustrations for scientific presentations or figures. Downloadable in HD. Thank you NIH for this invaluable tool 🙏!
Check it out 👇
bioart.niaid.nih.gov
Reposting due to the name!!
If you're interested in trying out LLMs in #rstats but don't know where to begin, I've added a few two vignettes to elmer: elmer.tidyverse.org/articles/elm... and elmer.tidyverse.org/articles/pro...
Would love to get added in this list
Thank science #skeeters for the starter-packs. Do anyone have a proteomics starter pack?
