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Thomas Haverkamp

@thomieh73

Microbiology / bioinformatics / photography and running around

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Latest posts by Thomas Haverkamp @thomieh73

An old concrete construction for trains, covered with graffiti. From the right sunlight falls in through arches

An old concrete construction for trains, covered with graffiti. From the right sunlight falls in through arches

Went for a walk at Südgelände. #berlin #photography #square #graffiti #sunlight

08.03.2026 15:13 👍 10 🔁 1 💬 0 📌 0
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Road to Brigadoon ᨒ

#Stunday #PhotographersOfBluesky #photography #bluesky #photo #PhotographersUnited #landscape #art #nature #classicmono #mono #monochrome #bw #bnw #blackandwhite #mist #fog #trees #mood #moody #dark

01.03.2026 19:46 👍 160 🔁 18 💬 6 📌 0

➡️ preprint from the lab! Bacteria have loads of antiviral defences in their mobile genetic elements (MGEs). So when MGEs move between bacteria, the defences move with them, generating a fast turnover of defences in bacteria. But what about the antiviral defence turnover in the MGEs themselves? 🤔

🧵👇

02.03.2026 08:36 👍 75 🔁 45 💬 1 📌 3
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Assessing sequencing-based pathogen surveillance of a recreational swimming area in Oslo, Norway Sequencing-based surveillance can enable rapid and sensitive detection of environmental pathogens. The Oslofjord inlet is relatively narrow and is exposed to substantial human activity, including occa...

We’ve published a wee pilot study assessing the utility of metagenomics & full-length 16S sequencing for the detection of seasonal pathogens (and AMR) in our local urban recreational swimming hot-spot

Check it out if you’re into that stuff :)

www.microbiologyresearch.org/content/jour...

02.03.2026 08:54 👍 8 🔁 5 💬 1 📌 0

What the F are Trump and his bunch thinking... this will go into a tailspin...

28.02.2026 17:09 👍 0 🔁 0 💬 0 📌 0
A black and white landscape covered in snow and with fog in the air

A black and white landscape covered in snow and with fog in the air

Whiteness
#photography #square #norway #snow #B&W

26.02.2026 16:26 👍 8 🔁 0 💬 0 📌 0
A winter forrest landscape near Oslo, Norway, with on the left cross country tracks in the snow. The sky is overcast.

A winter forrest landscape near Oslo, Norway, with on the left cross country tracks in the snow. The sky is overcast.

Out today in the Nordmarka of Oslo, #norway
It is good to be out in the snow with my cross county ski's.

22.02.2026 09:52 👍 1 🔁 0 💬 0 📌 0
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Last year, we proposed a model of plasmid evolution via fusion and fragmentation (via mge mediated recombination) generating mosaics, by studying historical isolates. Excited to see a MASSIVE paper from @jrpenades.bsky.social , @epcrocha.bsky.social expanding on this
www.biorxiv.org/content/10.6...

19.02.2026 23:11 👍 75 🔁 32 💬 1 📌 1
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starting March 1, 2026, researchers from the Chinese Academy of Sciences are prohibited from using central government funds to pay Article Processing Charges for high-priced OA journals, specifically Nature Communications and Science Advances.

20.02.2026 10:17 👍 52 🔁 26 💬 4 📌 9

So those numbers are correct. And honestly it is insane those prices.

20.02.2026 13:34 👍 1 🔁 0 💬 0 📌 0

From the Nature communications website
APC is 5490 pound / 7350 dollar / 6150 euro

20.02.2026 13:32 👍 0 🔁 0 💬 0 📌 0
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The stuff you don't need but more than half Americans take every day

gift link
nytimes.com/2026/02/09/w...

17.02.2026 15:20 👍 164 🔁 47 💬 7 📌 8
A snow landschape with a mushroom shaped bench in a park of Berlin. Behind the mushroom there is a snow covered lake.

A snow landschape with a mushroom shaped bench in a park of Berlin. Behind the mushroom there is a snow covered lake.

A snowy mushroom.
#photography #berlin #square #black&white #B&W #bench

17.02.2026 08:14 👍 5 🔁 0 💬 0 📌 0

Oslo, Bislett, always nice shadows when the sun shines.

17.02.2026 07:40 👍 0 🔁 0 💬 1 📌 0

Oh that makes wonder if the other half of experts has ties with the too expensive USA healthcare system. That would help.

16.02.2026 16:59 👍 0 🔁 0 💬 0 📌 0
Kallas, a former Estonian prime minister, also offers a bit more on Rubio’s speech, as she says “there were messages for us, and they were messages for the public in America.”

“For me, every time I hear this European bashing – it’s very in fashion right now – I’m thinking of what is the alternative and, and really, I mean, all the best or good things that we got from Europe, and all the good things that Europe actually represents.”

But she says she gets some reassurance from Rubio’s comments:

“The message that we heard from there is that America and Europe are intertwined; have been in the past and will be in the future. I think this is important. It is also clear that we don’t see eye to eye in all the issues and that this will remain the case as well, but I think we can work from there.”

She also takes a dig at the US, saying:

“Coming from a country that is #2 in the Press Freedom Index hearing criticism regarding press freedom coming from a country that is #58 on this list is interesting.”

Ouch.

Kallas, a former Estonian prime minister, also offers a bit more on Rubio’s speech, as she says “there were messages for us, and they were messages for the public in America.” “For me, every time I hear this European bashing – it’s very in fashion right now – I’m thinking of what is the alternative and, and really, I mean, all the best or good things that we got from Europe, and all the good things that Europe actually represents.” But she says she gets some reassurance from Rubio’s comments: “The message that we heard from there is that America and Europe are intertwined; have been in the past and will be in the future. I think this is important. It is also clear that we don’t see eye to eye in all the issues and that this will remain the case as well, but I think we can work from there.” She also takes a dig at the US, saying: “Coming from a country that is #2 in the Press Freedom Index hearing criticism regarding press freedom coming from a country that is #58 on this list is interesting.” Ouch.

EU’s Kallas is speaking on the main stage now.

In her first response to Rubio’s speech yesterday, she somewhat snarkily says that “contrary to what some may say woke decadent Europe is not facing civilizational erasure,” and says that many countries still “want to join our club – and not just fellow Europeans,” pointing to Canada.

EU’s Kallas is speaking on the main stage now. In her first response to Rubio’s speech yesterday, she somewhat snarkily says that “contrary to what some may say woke decadent Europe is not facing civilizational erasure,” and says that many countries still “want to join our club – and not just fellow Europeans,” pointing to Canada.

It is so refreshing to see some european leaders stand up for Europe's values.

www.theguardian.com/world/live/2...

15.02.2026 11:40 👍 3 🔁 1 💬 0 📌 0

Of course, that too! But on top of that, the pretext was that they should gain computer skills, but all they are taught is to navigate the horror show of the microsoft ecosystem

07.02.2026 13:53 👍 1 🔁 1 💬 0 📌 0

Hmmm, i think more people should read the SF classic : Wasp...
Terrorism only needs a single oppurtunity.

07.02.2026 13:47 👍 0 🔁 0 💬 0 📌 0

And what is more, kids actually learn better when they write with pen and study from real books.

07.02.2026 13:40 👍 1 🔁 0 💬 1 📌 0
ONT read QC strategies for assembly a blog for miscellaneous bioinformatics stuff

New blog post: ONT read QC strategies for assembly
rrwick.github.io/2026/02/05/r...

Mini-study comparing a few QC/subsampling approaches, plus practical notes from my experience.

05.02.2026 03:38 👍 34 🔁 14 💬 0 📌 0

We currently have company wide training sessions for microsoft software... word, excel teams etc. so it still happens today. IT found out that we were not using these tools effectively and thus pushed for it. Why else pay a lot to microsoft?

30.01.2026 11:43 👍 2 🔁 0 💬 0 📌 0
The Warehouse

I’ve been thinking about how to find R packages by functionality when you don’t already know the package name.

So over the holidays, Claude Code and I built The Warehouse: a functionality-first R package directory that helps you find packages by what they do.
rwarehouse.netlify.app

#rstats

27.01.2026 15:12 👍 69 🔁 21 💬 3 📌 3
Bruce Springsteen - Streets Of Minneapolis (Official Audio)
Bruce Springsteen - Streets Of Minneapolis (Official Audio) YouTube video by Bruce Springsteen

I wrote this song on Saturday, recorded it yesterday and released it to you today in response to the state terror being visited on the city of Minneapolis. It’s dedicated to the people of Minneapolis, our innocent immigrant neighbors and in memory of Alex Pretti and Renee Good.

Stay free

28.01.2026 17:02 👍 97507 🔁 40890 💬 4302 📌 5362
A big tree in a white field, with a grey sky

A big tree in a white field, with a grey sky

Winter in #norway.
#photography #snow #tree #square

28.01.2026 07:56 👍 8 🔁 0 💬 0 📌 0

Oh my, that was hidden deep in my memories.

27.01.2026 20:54 👍 1 🔁 0 💬 0 📌 0

It is January and frosty in Berlin, but big black flies still come out to enjoy the sun on the outside of our building.

19.01.2026 11:43 👍 0 🔁 0 💬 0 📌 0
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In remembrance of Peer Bork  | EMBL EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.

This is very sad news

'It is with great sadness that EMBL announces that Interim Director General Professor Peer Bork passed away from natural causes on 16 January 2026.'

www.embl.org/news/embl-an...

16.01.2026 18:06 👍 30 🔁 10 💬 3 📌 2
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Artificial intelligence tools expand scientists’ impact but contract science’s focus - Nature Artificial intelligence boosts individual scientists’ output, citations and career progression, but collectively narrows research diversity and reduces collaboration, concentrating work in data-rich a...

"AI tools seem to automate established fields rather than explore new ones, highlighting a tension between personal advancement and collective scientific progress."

www.nature.com/articles/s41...

16.01.2026 11:53 👍 21 🔁 8 💬 2 📌 1

So Trumps Greenland dreams, could help Putin with Ukraine... sounds reasonable to me.

14.01.2026 18:49 👍 0 🔁 0 💬 0 📌 0

And here we are: the entire transatlantic alliance is now talking about Greenland, instead of talking about ending the war in Ukraine.

14.01.2026 13:36 👍 9392 🔁 2738 💬 360 📌 139