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Helmholtz Imaging

@helmholtzimaging

Unlocking the potential of #imaging at the Helmholtz Association. Host Centers: DESY, DKFZ & MDC #HelmholtzImaging #ImagingScience

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08.11.2023
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Latest posts by Helmholtz Imaging @helmholtzimaging

New training opportunities on #metadata and #FAIRdata practices from #HMC.

New training opportunities on #metadata and #FAIRdata practices from #HMC.

New training opportunities on #metadata and #FAIRdata practices from #HMC.

Our courses support you in improving research data documentation, metadata quality & data reuse.

More info:
helmholtz-metadaten.de/hmc-trainings

#HMC2026
@helmholtzimaging.bsky.social @helmholtzosoffice.bsky.social

06.03.2026 11:44 πŸ‘ 0 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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What does your science look like? πŸ‘€ The Best Scientific Image Contest 2026 is now open!

Share your most striking scientific image & let it travel far beyond the lab. Awards & more await.

Submit by May 1 πŸ‘‰ awards.helmholtz-imaging.de/site/index.php

Open to everyone working at @helmholtz.de.

04.03.2026 08:58 πŸ‘ 5 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
This image shows Kathryn Spiers, GEO magazine in her hand, standing in a beamline at DESY. She is one of the co-authors of the image β€œRare Earth Element Fern”, that was awarded 2nd prize (Public Choice) at the Helmholtz Imaging Best Scientific Image Contest 2025, and that was recently featured in GEO magazine.

This image shows Kathryn Spiers, GEO magazine in her hand, standing in a beamline at DESY. She is one of the co-authors of the image β€œRare Earth Element Fern”, that was awarded 2nd prize (Public Choice) at the Helmholtz Imaging Best Scientific Image Contest 2025, and that was recently featured in GEO magazine.

A winning image from the #HelmholtzImaging Best Scientific Image Contest 2025 was featured in GEO magazine. β€œRare Earth Element Fern” by @kathryn-s.bsky.social et al shows how scientific images can reach far beyond research. Our next call opens spring '26. All winning images πŸ‘‰ bit.ly/BSIC2025-Gal...

05.02.2026 10:13 πŸ‘ 0 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Description: Visual to promote the Helmholtz Imaging Newsletter No. 25, image by Rafael Deliz-Aguirre, MDC. This image shows starfish embryos generating tiny currents that push them together to form crystal-like arrangements. The image shows colorful  lines that create circles on a black background.

Description: Visual to promote the Helmholtz Imaging Newsletter No. 25, image by Rafael Deliz-Aguirre, MDC. This image shows starfish embryos generating tiny currents that push them together to form crystal-like arrangements. The image shows colorful lines that create circles on a black background.

Our new Helmholtz Imaging Newsletter is out! πŸ™Œ

Save the date for the #HIConference2026 (Nov 9-13), discover new projects & tools, help shape the next conference via our community survey & more πŸ‘‰ bit.ly/HI-Newslette...

Image: Rafael Deliz-Aguirre, @mdc-berlin.bsky.social

@helmholtz.de #imaging

28.01.2026 10:59 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Preview
Making human pancreatic acinar cells Dresden researchers develop novel methods to create acinar cells, which are involved in the formation of pancreatic cancer.

The group of @anne-grapin.bsky.social developed methods to create functional acinar cells, which are involved in the formation of pancreatic cancer. Rashmiparvathi Keshara, Karolina Kuodyte, and the TDS facility used image-based screen & robust analysis pipeline. www.mpi-cbg.de/news-outreac...

21.01.2026 16:33 πŸ‘ 14 πŸ” 6 πŸ’¬ 2 πŸ“Œ 2
Reminder: Don’t miss TODAY's #HMC Open Office Hour!

Reminder: Don’t miss TODAY's #HMC Open Office Hour!

Reminder: Don’t miss TODAY's #HMC Open Office Hour!

Talk directly to #metadata experts & get tailored advice. Participation is free & open to everyone.

πŸ“… When: 22/01/2026
πŸ”— Registration: helmholtz-metadaten.de/events/hmc-o...

#HMC_OpenOffice
@helmholtz.de @kit.edu @hzdr.bsky.social

22.01.2026 09:31 πŸ‘ 2 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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7️⃣ new interdisciplinary Helmholtz Imaging projects have been selected! πŸŽ‰

New this year: the Generalizing Imaging Solutions track, supporting projects that develop reusable, cross-domain imaging solutions.

Congratulations to all teams!

πŸ‘‰ bit.ly/HI-Projects-...

@helmholtz.de #helmholtz #imaging

16.01.2026 09:39 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Experience imaging excellence and meet the minds shaping the future of imaging! Join us to discuss real-world imaging challenges, explore cutting-edge research & connect with experts across @helmholtz.de.

πŸ“… 9–13/11/26
πŸ“ Leipzig

Save the date & stay tuned πŸ‘‰ bit.ly/HI-Conf-2026...

#HIconference2026

15.01.2026 15:38 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Happy to be co-organizing the next Helmholtz Research Data Commons Forum on 3 Feb, 2026:
πŸ§ͺ Sample Handling & Tracking – Good and #FAIR Data Practices in Action

Open to everyone across @helmholtz.de
πŸ‘‰ Registration: events.hifis.net/event/3386

@helmholtzimaging.bsky.social @helmholtzai.bsky.social

14.01.2026 10:06 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

@helmholtz.de spoke with Dasha Trofimova, PhD about her work on AI systems for medical image analysis, collaboration and responsibility in science, and what motivates her in her work. πŸ‘‡ We’re proud to have Dasha as part of our team. 😊

#imagingscience #AI #imageanalysis #helmholtz

12.01.2026 08:22 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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✨ Season’s Greetings from Helmholtz Imaging ✨

We'd like to take a moment to thank our amazing community for another inspiring year.

Together, we pushed imaging science forward. Here’s to new projects, trainings & connections in 2026.

Happy holidays!

#helmholtzimaging #imaging #imagingscience

19.12.2025 14:30 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Exciting opportunity: @sprind-de.bsky.social will fund 3 European Frontier #AI Labs that explore new #foundationmodel classes, modalities, and run real products at scale. SPRIND's calling on builders, researchers & unconventional minds (starting Jan 15). More info πŸ‘‡ or www.sprind.org/en/words/mag...

17.12.2025 08:15 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Visual to promote Helmholtz Imaging Newsletter

Visual to promote Helmholtz Imaging Newsletter

Our final newsletter of the year is out! πŸ™Œ

Conference survey, new tools & workshop recording, community updates & more - all in one place!

Happy reading πŸ‘‰ bit.ly/HI-Newslette...

Image: Daniela Tirsch, @dlr-next.bsky.social & BjΓΆrn Schreiner, @freieuniversitaet.bsky.social

@helmholtz.de

09.12.2025 08:52 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
HMC @ #NFDI4DS Conference

HMC @ #NFDI4DS Conference

HMC @ #NFDI4DS Conference @fraunhoferfokus.bsky.social in #Berlin!

Don’t miss tomorrow’s Talk β€œBuilding a federated data science ecosystem: The Helmholtz Platforms 5 years on” by our colleague from #HIFIS (Wed, 12:20). Stop by to learn more & find an #HMC colleague on site for #metadata questions!

25.11.2025 09:24 πŸ‘ 3 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
Helmholtz Munich to Advance AI Benchmarking With Three Newly Funded Projects

Helmholtz Munich to Advance AI Benchmarking With Three Newly Funded Projects

#HelmholtzMunich to Advance AI Benchmarking With Three Newly Funded Projects

Shaping the next generation of trustworthy, scientifically robust #AI across research domains.

πŸ‘‰ t1p.de/ubzam

@helmholtz.de @helmholtzai.bsky.social @comphealthmunich.bsky.social @helmholtzimaging.bsky.social @stes.io

21.11.2025 08:26 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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Meet #PixelPatrol, a new (early-version) quality control & exploration tool for scientific image datasets.

PixelPatrol helps you quickly assess quality, consistency, and completeness of your data BEFORE diving into analysis.

Explore the tool πŸ‘‰ helmholtz-imaging.de/news/pixelpa...

@helmholtz.de

12.11.2025 16:42 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Screenshots von Analysetools fΓΌr 3D Bilddaten. Das erste Bild zeigt die Segmentierung verschiedener Organellen einer Betazelle. Das zweite Bild zeigt die Verteilung der Insulingranula in dieser Zelle.

Screenshots von Analysetools fΓΌr 3D Bilddaten. Das erste Bild zeigt die Segmentierung verschiedener Organellen einer Betazelle. Das zweite Bild zeigt die Verteilung der Insulingranula in dieser Zelle.

Diagramme zur 3D Verteilung von Insulingranula im VerhΓ€ltnis zum Golgi Apparat.

Diagramme zur 3D Verteilung von Insulingranula im VerhΓ€ltnis zum Golgi Apparat.

Wenn alles hΓΌbsch segmentiert ist, wollen wir natΓΌrlich auch noch Daten gewinnen. Z.B. wieviel Insulin in den Zellen ist und wie es verteilt ist, oder mit anderen Organellen interagiert. DafΓΌr nutzten wir Tools, die von @helmholtzimaging.bsky.social entwickelt wurden (siehe Bild).

12.11.2025 14:38 πŸ‘ 11 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

The Helmholtz Platforms Roadshow is tomorrow! πŸ‘

Join us at 11 AM CEST to explore how Helmholtz Imaging & our partner platforms can support your research. πŸ‘‡

Our colleagues Sara Krause-Solberg & Philipp Heuser will be there β€” bring your questions and join the discussion!

#datascience @helmholtz.de

11.11.2025 15:36 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Kick‑start your career in #DataScience & #IT with @helmholtz.de! Join the Career Day on 26/11.

What to expect:
β–ͺ️ Insights into diverse career paths
β–ͺ️ Networking

Featured speaker: Annika Reinke (Helmholtz Imaging Research Unit, @dkfz.bsky.social

Register πŸ‘‰ events.ringcentral.com/events/helmh...

03.11.2025 11:24 πŸ‘ 6 πŸ” 3 πŸ’¬ 0 πŸ“Œ 1

Don’t miss "Einstein in the Dome: In the Universe of Atoms" on 5/11 at 7 PM Zeiss Grand Planetarium in Berlin!

Deborah Schmidt, our Engineering and Support Unit Head at @mdc-berlin.bsky.social visualized the folding of proteins based on data from Cecilia Clementi’s group. πŸ™Œ Free entry!

More πŸ‘‡

28.10.2025 09:57 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Visual to promote the 12 projects from the Helmholtz UNLOCK call

Visual to promote the 12 projects from the Helmholtz UNLOCK call

@helmholtz.de is taking the next big step toward trustworthy AI! 12 projects from the UNLOCK call will build open, high-quality multimodal, and cross-domain benchmarks to test & compare AI models across science.

More πŸ‘‰ bit.ly/UNLOCK-Launch

#AI #Benchmarking #Helmholtz #OpenScience #unlock

27.10.2025 09:21 πŸ‘ 5 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0

We’re thrilled to see Deborah highlighted @helmholtzai.bsky.social! πŸ‘ At #HelmholtzImaging, she leads our Engineering & Support Unit at @mdc-berlin.bsky.social, developing tools for image analysis across scales & maintaining Helmholtz Imaging Solutions πŸ‘‰ bit.ly/HelmholtzIma...

#AI #ImagingScience

27.10.2025 09:03 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Group photo, workshop of mathematics of tranformers, September 2025, Hamburg

Group photo, workshop of mathematics of tranformers, September 2025, Hamburg

Researchers from across Europe met at DESY to explore an emerging field: the mathematics of transformers. The workshop connected experts from theory and practice to advance our understanding of deep learning.

More πŸ‘‰ bit.ly/mathematics-...

@helmholtz.de @helmholtzai.bsky.social #AI #transformers

21.10.2025 07:12 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Only a few spots left!

Join our 3D Data Visualization Workshop (Nov 10–13, Berlin) & bring your volumetric data to life with tools like Fiji, Blender & Neuroglancer.

Open to Helmholtz & HIDA community

Register by Oct 26 πŸ‘‰ events.hifis.net/event/2781/

@helmholtz.de @mdc-berlin.bsky.social

18.10.2025 06:57 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Working with data, code, images, or metadata? Join the virtual #Helmholtz Platforms Roadshow on 12/11 at 11 AM πŸ‘‰ bit.ly/Helmholtz-Pl...

Meet @helmholtzai.bsky.social, HIDA, HIFIS, HMC & @helmholtzimaging.bsky.social and discover free tools, training & support for your research.

@helmholtz.de

13.10.2025 09:50 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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🌟 We’re excited to share our weekly showcase of the Best Scientific Images 2025 on Instagram starting next week! πŸ“Έ

Join us @HelmholtzImaging to explore winning images and top runners-up that celebrate the beauty of science πŸ‘‰ bit.ly/HIonInstagram.

#HIbestimage25 #imaging @helmholtz.de

10.10.2025 08:44 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Registration open: Introduction to Image Registration workshop

Explore fundamental concepts & practical techniques for image registration!

πŸ“… Oct 29, 10–11:30 AM CEST (online)

Open to @helmholtz.de & HIDA partners

Register πŸ‘‰ bit.ly/intro-image-...

#HelmholtzImaging #imaging #datascience

01.10.2025 10:03 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Visual to promote the Helmholtz Imaging Newsletter No. 23, image by Jenny Hein & Thomas van de Kamp, KIT

Visual to promote the Helmholtz Imaging Newsletter No. 23, image by Jenny Hein & Thomas van de Kamp, KIT

Our new #HelmholtzImaging Newsletter is out! πŸ™Œ

Highlights include new #datascience courses, innovative #imaging applications, a new data tool & #sciencecommunication support.

Dive right in πŸ‘‰ bit.ly/HI-Newsletter-23

Image: @jennyhein.bsky.social & Thomas van de Kamp, @kit.edu

@helmholtz.de

08.09.2025 12:52 πŸ‘ 4 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Regularization in Image Reconstruction – Registration open

Gain an understanding of image reconstruction & inverse problems: regularization, deep learning & Bayesian methods - w/in hands-on tutorials.

πŸ“… Oct 6 (7h, online) | Free for @helmholtz.de employees & HIDA partners

πŸ‘‰ bit.ly/regularizati...

08.09.2025 10:05 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Emanuel SΓΆding’s keynote β€œThe Road to FAIR”

Emanuel SΓΆding’s keynote β€œThe Road to FAIR”

HMC Posters

HMC Posters

Great conversations at our joint #HIDS booth in the foyer

Great conversations at our joint #HIDS booth in the foyer

Don't miss the #HIDS booth

Don't miss the #HIDS booth

Day 2 at #dss2025 πŸš€

Yesterday: great poster sessions + lots of interest at our #HIDS booth.

Today: the Metadata Session featured Emanuel SΓΆding’s keynote β€œThe Road to FAIR”– very well received & sparked invitations to present elsewhere!
πŸ‘‰ Catch Emanuel at the Collaboration Coffee (13–14h) on ELNs

04.09.2025 09:04 πŸ‘ 2 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0