Mahipal Ganji's Avatar

Mahipal Ganji

@ganjilab

Assistant professor at IISc Bangalore. Interested in DNA nanotechnology, single-molecule biophysics, super-resolution imaging, chromatin organization. Lab webpage: www.ganjilab.org

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12.11.2024
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Latest posts by Mahipal Ganji @ganjilab

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Happy to share our Current Opinion review on the key challenges in accurately predicting 3D distances between chromatin segments and computing their dynamics. Thanks to @djost-physbiol.bsky.social @lucagiorgetti.bsky.social for the invitation to write this review! @shuvadipdutta.bsky.social

20.02.2026 11:25 πŸ‘ 9 πŸ” 7 πŸ’¬ 0 πŸ“Œ 0
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Thanks for highlighting our work on combining AI-based organelle dynamics detection in phase contrast with fluorescence!

www.nature.com/ncomms/edito...

@natcomms.nature.com and Nelio Rodriguez. Spearheaded by @wl-stepp.bsky.social with collaborators @jclandoni.bsky.social @maweigert.bsky.social

19.02.2026 06:52 πŸ‘ 27 πŸ” 11 πŸ’¬ 0 πŸ“Œ 0

How short can a degron be?
A compact, genetically encoded, 9-aa tunable degron that drives MDM2-dependent degradation enabling precise control of protein levels from yeast to human cells.
Thanks to @eswarappalab.bsky.social for the opportunity to explore this in yeast.
#Degron #Yeast #CellBiology 🧬

12.02.2026 10:17 πŸ‘ 10 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0
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Interested in tunable protein degradation? Check out our new preprint describing a compact, portable degron derived from MTCH2: doi.org/10.64898/202...

Led by Lekha EM

Saubhik Som
Ramon Boro
Sandeep Eswarappa

Great collaboration w/ Anubhav Dhar
Eepsitha
@syncellbiolab.bsky.social
#iiscbangalore

12.02.2026 10:06 πŸ‘ 6 πŸ” 2 πŸ’¬ 1 πŸ“Œ 1

I’m honored to be part of the next GRS Single Molecule Approaches to Biology, thanks Chairs @qmsmith.bsky.social and Alba Gomez Segalas for organizing this great event! The GRS is a wonderful opportunity for young scientists to share their exciting science and build communities. See you there!

23.01.2026 11:21 πŸ‘ 5 πŸ” 5 πŸ’¬ 0 πŸ“Œ 0
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We developed a 'smart STED microscope' to detect rare objects/events in cells, and unraveled the 3D morphology of a nuclear membraneless organelle (paraspeckle). Amazing collaboration with Sjoerd Stallinga, Bernd Rieger (TU Delft) and @mixmue.bsky.social πŸ™ (1/3) www.nature.com/articles/s41...

28.11.2025 15:12 πŸ‘ 42 πŸ” 13 πŸ’¬ 2 πŸ“Œ 1
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Excited to share a new preprint from a team of researchers I am part of (funded by an NIH grant). The paper helps us understand a question I have been interested in for a while: why are bacteria so resilient?
www.biorxiv.org/content/10.1...
@meyerroc.bsky.social
@juliebiteenlab.bsky.social

22.10.2025 19:20 πŸ‘ 5 πŸ” 2 πŸ’¬ 2 πŸ“Œ 0

Wonderful news. Well deserved honor, Cees!

24.09.2025 01:11 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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(1/n) DNA-PAINT imaging inside the nucleus at single antibody resolution using TIRF? Ultrathin sectioning makes it happen!

Grateful to share my postdoctoral work introducing β€œtomographic & kinetically-enhanced DNA-PAINT” or in brief: tkPAINT. Out in @pnas.org!
doi.org/10.1073/pnas...
πŸ‘‡πŸ§΅

13.08.2025 14:19 πŸ‘ 68 πŸ” 22 πŸ’¬ 2 πŸ“Œ 3

Thank you for having me here, Mike. Big thanks to all the organizers. It was fantastic meeting. Looking forward to the next editions of #SMLMS2025

30.08.2025 00:53 πŸ‘ 4 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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πŸ“’ Dear lovers of prokaryotic chromosomes:
Registration for the Biology & Physics of Chromosomes meeting has been extended until 7 August ⏳.
Join us!
@biophychrom.bsky.social
@danielabarilla.bsky.social
@damelab.bsky.social
@graingerlab.bsky.social
@biochemsoc.bsky.social
#microsky

30.07.2025 10:20 πŸ‘ 6 πŸ” 7 πŸ’¬ 0 πŸ“Œ 1

Beautiful. Congrats Luciano!

30.07.2025 15:36 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Talk slots full but we can take late breaking poster abstracts until August 7th. Hope to see you in York to hear about your chromosome story 🧬🦠🧫

www.eventsforce.net/biochemsoc/f...

@vslioy.bsky.social @damelab.bsky.social @graingerlab.bsky.social @biochemsoc.bsky.social @biophychrom.bsky.social

25.07.2025 12:14 πŸ‘ 9 πŸ” 10 πŸ’¬ 0 πŸ“Œ 1

And the story is published now!🍾
www.nature.com/articles/s41...

Open access link: rdcu.be/exnOc

Many years in the making, great collaboration with @archaellum.bsky.social & @tunglejic.bsky.social

Thanks @ukri.org BBSRC & @leverhulme.ac.uk for funding, reviewers & editor!! πŸ™
#microsky #archaeasky

22.07.2025 21:06 πŸ‘ 85 πŸ” 34 πŸ’¬ 4 πŸ“Œ 0

Very much looking forward for #SMLMS2025

27.06.2025 16:49 πŸ‘ 5 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

πŸ”¬ Are you working with single-molecule super-resolution methods (SMLM, MINFLUX) and would like to meet experts in the field and discuss your work? πŸ‘‰πŸ» consider attending the SMLMS 2025 Meeting in Bonn πŸ‘‰πŸ» abstract submission is open until June 27th πŸ‘‰πŸ» www.smlms.org @smlm-symposium.bsky.social

12.06.2025 05:57 πŸ‘ 12 πŸ” 9 πŸ’¬ 0 πŸ“Œ 0

Such fantastic news! I had the privilege of working with Cees β€” an incredibly inspiring scientist. His research truly deserves this recognition. Huge congratulations, Cees!

08.04.2025 09:17 πŸ‘ 5 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Big congrats, Cees. Richly deserved. πŸ‘πŸ‘πŸ₯³πŸ₯³

08.04.2025 09:11 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Live tracking of replisomes reveals nutrient-dependent regulation of replication elongation rates in Caulobacter crescentus Adhikashreni etΒ al. use quantitative live-cell imaging to track cell-cycle dynamics in hundreds of individual bacteria. They observe nutrient-dependent regulation of replication elongation rates that ...

Happy to share Asha Joseph and Inchara Adhikashreni's latest work from the lab, describing replisome speed variation in Caulobacter!

www.cell.com/current-biol...

04.04.2025 15:57 πŸ‘ 35 πŸ” 15 πŸ’¬ 1 πŸ“Œ 1
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Latest #CDlab paper online in @labonachip.rsc.org: pubs.rsc.org/en/content/a...

Here, 1st authors Alex Joesaar & Martin Holub developed a microfluidics platform to extract and study full length megabase-size genomes in microfluidic chambers (where they are protected against shearing by flow)!

03.03.2025 09:13 πŸ‘ 30 πŸ” 11 πŸ’¬ 3 πŸ“Œ 1

Hey #chemsky and beyond, with all that is going on, I am curious what expensive, high margin molecules we could provide to the community for free. What things do you use all the time, cost way too much, and would make a difference? Alexa Fluor 488 NHS? Other dyes? Other molecule?

01.03.2025 13:57 πŸ‘ 68 πŸ” 30 πŸ’¬ 7 πŸ“Œ 1
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Future Directions of the Prokaryotic Chromosome Field In September 2023, the Biology and Physics of Prokaryotic Chromosomes meeting ran at the Lorentz Center in Leiden, The Netherlands. As part of the workshop, those in attendance developed a series of ....

In @molecularmicro.bsky.social: two special issues on Prokaryotic Chromosome Organization. Many excellent contributions, including a vision article: 'Future directions of the Prokaryotic Chromosome Field', outcome of BioPhyChrom 2023 @biophychrom.bsky.social onlinelibrary.wiley.com/doi/10.1111/...

20.02.2025 20:14 πŸ‘ 32 πŸ” 25 πŸ’¬ 2 πŸ“Œ 2
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Γ…NGSTRΓ–M-RESOLUTION IMAGING OF CELL-SURFACE GLYCANS 🧬🎨🍬

The glycocalyx, our cells' sugar coat, holds secrets in immunology, cancer, viral infections, and more. Visualizing its molecular architecture was impossible… until now. #glycotime #microscopy

www.biorxiv.org/content/10.1...

10.02.2025 08:21 πŸ‘ 314 πŸ” 101 πŸ’¬ 15 πŸ“Œ 15

The kindest of gentle reminders. We have one week to go on one #PhDPosition and one #PostdocPosition in single-molecule dielectrophoresis. Do you like single molecules , advanced optics and nanotechnology? More details in the threadπŸ‘‡ Dear Bluesky poplulation, please help with reposting

06.02.2025 10:53 πŸ‘ 7 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
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Thermodynamic principles link in vitro transcription factor affinities to single-molecule chromatin states in cells www.biorxiv.org/content/10.1...
▢️40-fold flanking sequence effect on TF binding
▢️Motif recognition beats kinetics
▢️Minutes-long residence times
▢️Models of TF-nucleosome competiton

01.02.2025 17:58 πŸ‘ 32 πŸ” 10 πŸ’¬ 0 πŸ“Œ 1

πŸ˜… really cool!!!

30.01.2025 05:19 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

This is a fantastic community to be part of. Don’t miss the chance!

22.01.2025 01:56 πŸ‘ 4 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0

Amazing!

17.01.2025 07:39 πŸ‘ 5 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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πŸ”¬ Ever wondered how therapeutic antibodies work?
3D LLS-TDI-DNA-PAINT and live-cell LLS microscopy allow decoding of the molecular interplay of endogenous CD20 on B cells with therapeutic antibodies.

πŸ“„ Read more: www.science.org/doi/10.1126/...

10.01.2025 09:00 πŸ‘ 35 πŸ” 11 πŸ’¬ 2 πŸ“Œ 2