zaira seferbekova πŸ‘©πŸ»β€πŸ’»'s Avatar

zaira seferbekova πŸ‘©πŸ»β€πŸ’»

@zaira-sef

phd in comp onco | πŸ‹πŸ»β€β™€οΈπŸŽ¨ πŸˆβ€β¬› πŸ¦… πŸ’…πŸ» bioinformatician @ umm | prev @ dkfz w/ moritz gerstung #compbio #cancer #spatialomics #visuals #organisation

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06.10.2025
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Latest posts by zaira seferbekova πŸ‘©πŸ»β€πŸ’» @zaira-sef

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cosy home office time 🐱

12.12.2025 20:31 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

No, James Watson was not a "complicated" person. He was a bad person, and also a bad scientist. These racist, sexist statements, his sincere beliefs, are both morally indefensible and scientifically absurd. With every year that passes, let his name fade and Rosalind Franklin's shine the brighter.

07.11.2025 23:44 πŸ‘ 33 πŸ” 6 πŸ’¬ 0 πŸ“Œ 0
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today was my last day in the group β€” will miss my small mathematikon family so so much! πŸ’—

ah, and I also submitted my dissertation ✨

31.10.2025 17:49 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

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πŸ”— check the preprint for more details!
www.medrxiv.org/content/10.1...

06.10.2025 12:41 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

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πŸ™ a special thanks to @abigailsuwala.bsky.social, @moritzgerstung.bsky.social, and Felix Sahm for their exceptional guidance and mentorship throughout this project. and heartfelt thanks to all our co-authors for valuable contributions and discussions!

06.10.2025 12:41 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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πŸ’­ together, these results highlight how tumour–immune cell interactions shape radiation-induced brain changes, distinct from true progression.

our work provides a molecular foundation to improve diagnostics and treatment in GB patients.

06.10.2025 12:41 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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in RN:

πŸ” high numbers of tumour cells with low EGFR expression and no proliferation despite EGFR amplification.

πŸ” the tumour cells colocalised with infiltrating border-associated macrophages releasing cytokines, likely contributing to gliosis.

06.10.2025 12:41 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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🧠 our key findings:

in recurrent GB, we found progenitor and proliferating tumour cells with high EGFR expression.

06.10.2025 12:41 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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🎨 we built a spatially resolved single cell atlas of ~1,19M cells encompassing nine cell types –– the first of its kind directly comparing histologically confirmed RN changes and recurrence in GB.

06.10.2025 12:41 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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πŸ”¦ we analysed 10 samples from 9 GB patients who all showed radiological progression. however, histopathology revealed:
🧠 4 true recurrences
πŸ”¬ 4 RN changes
πŸ–‡οΈ 1 mixed case
we profiled these with 10x Xenium and the Brain Expression Panel.

06.10.2025 12:41 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

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πŸ’‘ why this matters?
radiotherapy is standard treatment for GB, but it can cause RN changes that mimic tumour progression on MRI and cause similar symptoms – yet require very different management. hence, histopathology remains the diagnostic gold standard.

06.10.2025 12:41 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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🚨 new glioblastoma preprint alert!

we present the first spatially resolved single cell atlas comparing radionecrotic changes (RN) and recurrent IDH-wildtype glioblastoma (GB) –– shedding light on a long-standing diagnostic challenge.

🧡 1/

06.10.2025 12:41 πŸ‘ 13 πŸ” 7 πŸ’¬ 1 πŸ“Œ 2