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Simon F. Nørrelykke

@simonfn

BioImage analysis and teaching Harvard Medical School | Previously ETH, Princeton, MPI-PKS, LENS, Niels Bohr Institute, University of Oxford, Aarhus University. https://iac.hms.harvard.edu

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10.09.2023
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Latest posts by Simon F. Nørrelykke @simonfn

I am looking for two postdocs to join our lab
- One (bio)image analyst
- One cell biologist interested to work on lymphatics!

The positions will open soon, be in touch!

09.01.2026 15:17 👍 21 🔁 31 💬 0 📌 1
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Deep Learning for Microscopy Image Analysis Topics The following will be covered extensively during lectures, exercises, and project work: Image denoising and restoration (fully supervised and self-supervised) Image translation (e.g.,

🚨 Alarm!!! 🚨
AI/ML course for microscopy image analysis!!! 🧐
In 2026 at Janelia (@hhmijanelia.bsky.social), no tuition, housing and meals provided! Isn’t that borderline unbelievable?!?

20 students, ~14 TAs and lecturers
🗓️ June 4-18 2026

✍️ Jan 15 2026 ✍️

🔁 pls!!

www.janelia.org/you-janelia/...

28.12.2025 19:05 👍 78 🔁 62 💬 0 📌 3

We moved the AI@MBL course "Deep Learning for Microscopy Image Analysis" to HHMI Janelia (@hhmijanelia.bsky.social).

Join us for two weeks of intense lectures, exercise, and hands-on project work!

Course dates: June 4-18 2026
Application by: January 15 2026

www.janelia.org/you-janelia/...

17.11.2025 19:44 👍 18 🔁 9 💬 1 📌 1
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Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...

Job alert!

We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?

See also on the forum:
forum.image.sc/t/research-e...

07.10.2025 12:39 👍 62 🔁 80 💬 2 📌 8
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📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...

📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!

Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬

📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...

30.09.2025 11:01 👍 32 🔁 28 💬 2 📌 4

Do you like theoretical biology, mathematical&conceptual modelling and want to apply yourself to cutting-edge research at all levels of biology, from molecules to ecosystems?

Come to EMBL! Scope includes physics-based models, emergence, statistics, ML/AI
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

29.09.2025 07:03 👍 45 🔁 35 💬 0 📌 0
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Ready to shape the future of AI in life science? The next call for DDLS Fellows is opening soon, offering an outstanding opportunity for ambitious young researchers to establish their own internationally competitive research groups. This round has a...

🚨 Wow, that really sounds like an amazing opportunity… If I were a bit younger, I would start preparing my application already… 😮

www.scilifelab.se/news/ready-t...

12.09.2025 13:46 👍 13 🔁 5 💬 1 📌 0
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University Researcher in Bioimaging / Universitetsforskare med inriktning bioimaging, 1.11.2025-31.12.2030

Come and work with us 5-year position available for a University Researcher in Bioimaging 1.11.2025-31.12.2030

abo.rekrytointi.com/paikat/index...

10.09.2025 11:28 👍 35 🔁 38 💬 0 📌 1
Post image Post image

Check out our amazing #bobiac2025 cohort! Was a joy to teach this group! Thanks @bioimagingna.bsky.social for generously supporting this 6 week bioimage analysis w/Python course!

29.07.2025 18:20 👍 6 🔁 3 💬 0 📌 0
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Day 1 of #bobiac2025 🐍

The day started strong with @talley.codes speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code in Python with @sciencedoodles.bsky.social!

14.07.2025 20:27 👍 7 🔁 4 💬 0 📌 0

Thank you Guillaume!

14.07.2025 15:10 👍 0 🔁 0 💬 0 📌 0
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First day of #bobiac2025. Six days of intensive Python based #BioImageAnalysis. Intro by @fedegasparoli.bsky.social
- "This will be a long week, but it will change your life".

iac.hms.harvard.edu/bobiac/2025/

14.07.2025 13:30 👍 21 🔁 4 💬 1 📌 2

A major KI initiative to recruit new assistant professors with outstanding proposals in all areas of medicine, biomedicine and public health. We offer an amazing research environment, great colleagues and generous startup packages. Check it out and get working on your applications! (repost please!)

25.06.2025 10:08 👍 115 🔁 109 💬 2 📌 3

Are you looking for a postdoc?
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!

23.06.2025 14:29 👍 70 🔁 87 💬 0 📌 7

Come and work with us!
Super exciting and relevant projects!
Become an #AI pro and do something positive for the 🌍!
👩‍🎓 🧑‍🎓
If you know someone who might be interested… please repost and/or forward this! 🙏

09.06.2025 07:51 👍 14 🔁 12 💬 1 📌 0
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‼️3 days left to apply to the Boston Bioimage Analysis Course (BoBiAC)! 💻

Get started w/Python & learn to analyze fluorescence microscopy images — no programming experience required!

Fee waivers available!

🗓️ Apply by June 1st!
🌐 iac.hms.harvard.edu/bobiac/2025/

30.05.2025 15:16 👍 4 🔁 4 💬 0 📌 0
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Deadlines extended - you can still register for the GloBIAS conference! We have extended most deadlines. Please check our webpage: tinyurl.com/mr3kx5a5! Looking forward to welcoming you to Kobe, for training, developing and discussing a broad range of BIA topics!

15.05.2025 18:41 👍 9 🔁 9 💬 0 📌 4

Thanks to generous support from @bioimagingna.bsky.social
we now have even more fee-waivers for our workshop.

No funds, but want to learn? Apply below.

08.05.2025 19:58 👍 2 🔁 0 💬 0 📌 0
Ad for the Bioimage Analysis Beginnings Bootcamp at the Broad Institute. 

Where & When
Broad Institute, 415 Main Street, Cambridge MA (in-person only)
Monday–Friday, August 4–8, 20259:00 AM – 5:00 PM

About the Bootcamp
Learn core bioimage analysis skills using open-source tools for light
microscopy in this hands-on, in-person course. The Bootcamp
covers annotation, segmentation, and deep learning fundamentals.

Fee: $600 (Academic/Non-Profit) | $1000 (Industry/For-Profit)
For more information email ImagingAdmin@broadinstitute.org

Ad for the Bioimage Analysis Beginnings Bootcamp at the Broad Institute. Where & When Broad Institute, 415 Main Street, Cambridge MA (in-person only) Monday–Friday, August 4–8, 20259:00 AM – 5:00 PM About the Bootcamp Learn core bioimage analysis skills using open-source tools for light microscopy in this hands-on, in-person course. The Bootcamp covers annotation, segmentation, and deep learning fundamentals. Fee: $600 (Academic/Non-Profit) | $1000 (Industry/For-Profit) For more information email ImagingAdmin@broadinstitute.org

BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...

01.05.2025 21:22 👍 63 🔁 41 💬 0 📌 4
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‼BREAKING‼
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!

Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025

22.04.2025 14:55 👍 19 🔁 12 💬 0 📌 2

Please join in-person if you are nearby, or by Zoom if not.

15.04.2025 10:06 👍 3 🔁 1 💬 0 📌 0
GloBIAS and Data Carpentry members group picture

GloBIAS and Data Carpentry members group picture

In the past 2 days, we had the great pleasure to host an in-person workshop at @istaresearch.bsky.social with the collaboration of @globias.bsky.social, @carpentries.carpentries.org and @istaustria-iof.bsky.social.

We wanted to create a go-to course for image analysis in Python. Info in the thread!

09.04.2025 11:33 👍 26 🔁 10 💬 1 📌 1

Your yearly reminder to acknowledge the core facilities you use and their staff scientists in your papers. These scientists are a crucial part of the scientific ecosystem and to continue to exist they need tangible credit for their work. Plus their associated expertise adds credibility to your work.

10.04.2025 13:38 👍 488 🔁 165 💬 7 📌 16

We wrote an opinion with simple, practical advice for building data exploration workflows in quantitative cell biology with @guijacquemet.bsky.social and @hanna09.bsky.social . I hope you find it useful!

08.04.2025 05:26 👍 25 🔁 10 💬 0 📌 0
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Ask Erin, Dear Beth On Ask Erin/Dear Beth, bioimage analysis experts Beth Cimini and Erin Weisbart, of the Imaging Platform at the Broad Institute of MIT and Harvard, answer your image analysis questions! Whether it’s ab...

Delighted to announce that @erinweisbart.bsky.social and I have teamed up to create a new bioimage analysis video podcast called Ask Erin/Dear Beth - you can check it out at the link below! It will highlight common challenges in #bioimageanalysis, as well as our favorite solutions to them. (1/x)

07.04.2025 22:11 👍 55 🔁 30 💬 1 📌 1

www.globias.org/activities/u...

08.04.2025 09:56 👍 6 🔁 2 💬 0 📌 0
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Another in-person event from #GloBIAS Together with #Data Carpentry. Thanks to the GloBIAS volunteers at ISTA for organising and hosting us! #BioImageAnalysis #Python

08.04.2025 08:03 👍 9 🔁 3 💬 0 📌 1
F-BIAS: Towards a distributed national core facility for Bioimage Analysis.

Preprint (update) alert!

F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009)

0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France.

👇 a short thread

31.03.2025 07:39 👍 36 🔁 18 💬 3 📌 3

Now that looks like a great new course to check out!
More python 🐍 heavy than other courses I know… which is great to have! 👍
Check it out, sign up, learn!!! 🤩

28.03.2025 18:00 👍 9 🔁 4 💬 0 📌 0

The registration close Tuesday next week!
research.pasteur.fr/en/course/ne...

26.03.2025 11:41 👍 7 🔁 7 💬 0 📌 0