SMT

They are likely using a cheap model. You get similar behavior in vscode copilot with cheaper models

Using semantic search to find publicly available gene-expression datasets academic.oup.com/bioinformati... 🧬💻🧪 github.com/srp33/GEO_NLP

today's #rstats package of the day 🏆 is pwrss which made it very easy to compute the power of a difference between correlations

cran.r-project.org/web/packages...

HTTP streaming and Server-Sent Events in R with nanonext HTTP streaming and Server-Sent Events in R with nanonext - sse.R

HTTP streaming and Server-Sent Events in R with nanonext. Here's an example: gist.github.com/jrosell/178e...

#ridiculousbutcool
Embedding #RStats in #Duckdb via #TinyCC and Duckdb's C extensions API

#Duckdb #TinyCC Ridiculous, dangerous but cool !
(very roundabout way to test out ideas of a potential api for a #RStats UDFs extension)
Link for segfault lovers : github.com/sounkou-bioi...

Very happy to see Wasm gaining traction as a low barrier to entry alternative for programming thanks to the massive efforts by @quantstack.bsky.social 🎉 We're collecting Wasm resources for bioinformatics and beyond at wasmodic.github.io

A small generative animation made in #rstats using #ggplot2 and my experimental packages, playing with polar lines, hue rotation, and shader-style deformations.

Excited to share my first preprint on federated conditional analysis of rare single variant and aggregate association tests across six genetically-inferred ancestry groups in All of Us and UK Biobank doi.org/10.64898/202...

#rstats 4.5.3 "Reassured Reassurer" scheduled for March 11. Full schedule on developer.r-project.org (or the svn if you're impatient.) This should be the wrap-up release for the 4.5 series.

Foto of a feminine nonbinary person in a purple floral shirt in front of a purple poster. The poster is displaying a structural equation model analysing the influence of parental education on children’s school grades. The person is smiling cheekily to the side.

Foto of a child with four fluffy buns and blue sunglasses. The child has lowered the sunglasses below their nose and is gazing over them.

Hi, I’m this week’s curator, Josi! I‘m a PhD student in statistical genetics 🧬 and use #RStats to do #SEM. I dabble in #DataViz and recently wrote my first #Rpackage. My hobbies are reading #Fantasy books 📚 and #maximalism. You may catch me at a conference matching my outfit to my poster 🤓🧜🏽‍♀️ #rladies

#RStats #tinyverse gurus: is their a mutation testing package out there that is compatible with {tinytest} ?

tinyverse vs ....

SMT (@bioinfhotep@genomic.social) Attached: 4 images #Genomics #Bioinformatics Release of duckhts: #htslib based #Duckdb Extension for High Throughput Sequencing File Formats https://duckdb.org/community_extensions/extensions/duckh...

#Duckdb #htslib #Genomics #Bioinformatics #RStats

duckths: Read HTS (VCF/BCF/BAM/CRAM/FASTA/FASTQ/GTF/GFF) files in DuckDB via htslib

Rduckhts: 'DuckDB' High Throughput Sequencing File Formats Reader Extension
genomic.social/@bioinfhotep...

base R packages

dtplyr: Data Table Back-End for 'dplyr' Provides a data.table backend for 'dplyr'. The goal of 'dtplyr' is to allow you to write 'dplyr' code that is automatically translated to the equivalent, but usually much faster, data.table code.

i guess you can always use this package cran.r-project.org/web/packages...

link is broken

GitHub - r-tooling/r4r: Monorepo for everything linked to the r4r project Monorepo for everything linked to the r4r project. Contribute to r-tooling/r4r development by creating an account on GitHub.

R4R is a tool for creating a reproducible environment from a dynamic program trace, from our lab in Prague.

From a R script/notebook, it generates a Docker image that contains everything to run the R code and reproduce the results.

Try it out!

Also with an article at ACM REP 2025

GitHub - PRL-PRG/rcp Contribute to PRL-PRG/rcp development by creating an account on GitHub.

#RStats Interesting Work to follow from Workers in the Vitek group

crbcc: R bytecode compiler implemented in C

github.com/PRL-PRG/crbcc

rcp : Copy-and-Patch JIT Compiler for R

github.com/PRL-PRG/rcp

Nallo: a Nextflow pipeline for comprehensive human long-read genome analysis AbstractMotivation. Long-read sequencing (LRS) is increasingly used for human medical research and clinical diagnostics, due to its capacity to generate co

Say hello to Nallo - our Nextflow pipeline for long-read WGS analysis!👋 It handles both ONT and PacBio data and we’re using this for rare disease and population projects in Sweden. A big team effort by Felix Lenner, Anders Jemt et al.🧬💻 academic.oup.com/bioinformati...

#RStats When i was looking at some of the perf in quickr readme, i was thinking oh these tails are R's garbage collection pauses, the R-to-C (LLM enabled) rabbit hole i went in makes the pauses worse because it is really R to R's C API and sometimes calling into R via Rf_eval :D

I love R for everything statistics, but I've always been a little jealous of statisticians using SPSS Complex Samples or SAS SURVEYSELECT to design their samples.

So I decided to build samplyr, a tidy and pipe-friendly grammar for survey sampling design in #rstats.

dickoa.gitlab.io/samplyr/inde...

Feb. update to the LLM+R guide 💪

8 new packages including:
code review, predictive modeling, speech-to-text, text-to-speech, HuggingFace integration, Gemini CLI companion, a CLI coding agent written in R🤯 ,and more!

available in English 🇱🇷 and Spanish 🇲🇽
luisdva.github.io/llmsr-book/
#rstats

#tinycc based #RStats #C #Transpiler, only 4x slower than #{quickr} for the convolution benchmark ! 2-3x faster than naive #C + marshaling. #tinycc transpilation will have an obvious advantage since it can always fallback when transpiling and use `Rf_lang3` since it has access to R's C runtime !

GitHub - r-xla/tengen Contribute to r-xla/tengen development by creating an account on GitHub.

#Rstats #HPC gurus
Is there a package for mixed precision arithmetic that covers most of the exotic new floating points or one needs specialized ML package from the r-xla organization like tengen github.com/r-xla/tengen

GitHub - eddelbuettel/r2u: CRAN as Ubuntu Binaries CRAN as Ubuntu Binaries. Contribute to eddelbuettel/r2u development by creating an account on GitHub.

First thing to do when you open a #Rstats project in #codex webapp, copy paste the r2u installation docs github.com/eddelbuettel... and tell it to write #Rstats scripts for R package dev instead of snake crap (they RL perl out this model for some unknown reason)

#RStats #Statsky
Any references and packages out there on statistical inference around binary outcomes for whom some outcome have no measurement error but the other has ? Should i just use linear models and get over it ?

GitHub - comp-med/r-ofhelper: Utility R package for the Our Future Health DNAnexus Trusted Research Environment Utility R package for the Our Future Health DNAnexus Trusted Research Environment - comp-med/r-ofhelper

For those of us R-users who are working with/on #dnanexus (specifically the Our Future Health TRE), I've written a small #rstats package to interact with their `dx` utility and submit jobs (among other things): github.com/comp-med/r-o...

#Rstats to avoid if/else and switch death in this project, a functional and centralized (reviewable) definition of the rules for future improvements, i thought that #{lambda.r} package's (by Brian Lee Yung Rowe) pattern matching would be great

github.com/zatonovo/lam...