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Matt Smear

@mattsmear

Associate professor, University of Oregon Follows your nose

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03.07.2023
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Latest posts by Matt Smear @mattsmear

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Flies beat their wings more than 200 times per second. How do proprioceptors rapidly sense and fine tune the wingstroke?

@ellenlesser.bsky.social combined genetic tools with the connnectome to create an atlas of Drosophila wing proprioceptors. @elife.bsky.social

elifesciences.org/articles/107...

12.03.2026 14:28 πŸ‘ 18 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0

We show that synesthesia is sensory and automatic in nature: the pupil scales with the brightness of experienced synesthetic colors. doi.org/10.7554/eLif...
Now in its new dress @elife.bsky.social (convincing & valuable in round 1).
If anyone wants to pick up the method, happy to share & explain!

07.03.2026 07:58 πŸ‘ 76 πŸ” 22 πŸ’¬ 4 πŸ“Œ 0

Here is a long story in the Columbia Spectator on Richard Axel's involvement with Epstein

www.columbiaspectator.com/news/2026/03...

1/3

06.03.2026 21:22 πŸ‘ 23 πŸ” 18 πŸ’¬ 4 πŸ“Œ 2
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... and for a little glimpse of comparative data, see figure 4. These are EPG neurons (head direction cells of the central complex) across a range of species, from earwigs to bees.

01.03.2026 21:04 πŸ‘ 24 πŸ” 7 πŸ’¬ 1 πŸ“Œ 0

Very happy to see this paper come out from Lucas Martins @d-lucas.bsky.social and Alexandre Laborde. They developed an awesome framework, built with .NET, for developing software to run demanding high-speed behavior and functional imaging experiments.
dx.plos.org/10.1371/jour...

24.02.2026 14:12 πŸ‘ 7 πŸ” 5 πŸ’¬ 1 πŸ“Œ 1
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Sitting in a talk on the lamina cribrosa of the eye, and am kinda horrified at the potential stresses on the optic nerve as it leaves the eye and goes to brain.

17.02.2026 17:42 πŸ‘ 60 πŸ” 7 πŸ’¬ 9 πŸ“Œ 3
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Gordon, it's 10:10 a.m. on February 16th #PhillipJeffriesDay

16.02.2026 20:15 πŸ‘ 134 πŸ” 61 πŸ’¬ 2 πŸ“Œ 1

Using our bee-tracking drone, we discovered that honey bees 🐝 have highly precise and individual routes. Now published at @currentbiology.bsky.social : doi.org/10.1016/j.cu...

16.02.2026 16:22 πŸ‘ 255 πŸ” 118 πŸ’¬ 6 πŸ“Œ 9
Spiking of head-direction cells in the postsubiculum during movement (top) and during the transition from non-REM to REM sleep (bottom). Cells are sorted and colour-coded according to their preferred directions.

Spiking of head-direction cells in the postsubiculum during movement (top) and during the transition from non-REM to REM sleep (bottom). Cells are sorted and colour-coded according to their preferred directions.

I don't think I'll ever get bored of looking at raster plots of head-direction cells 🀩

13.02.2026 11:05 πŸ‘ 64 πŸ” 5 πŸ’¬ 3 πŸ“Œ 2

RNA world is a leading theory of how life began in the first place.

the dynamical perspective is maybe a path to a possible concept of a potential theory of why modern organisms replicate, develop, and function ok sometimes but not so great.

12.02.2026 13:35 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Frontiers | Brains as Computers: Metaphor, Analogy, Theory or Fact? Whether electronic, analog or quantum, a computer is a programmable machine. Wilder Penfield held that the brain is literally a computer, because he was a du...

Certainly cool to think about at least!

@romainbrette.bsky.social has made analogous arguments about "representations" in the brain, which I also struggle with but like to think about

www.biorxiv.org/content/bior...
www.frontiersin.org/journals/eco...

11.02.2026 17:23 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

I struggle with dynamical systems theory, but I think maybe it frames the genome itself as the cook, or maybe more as a guide that helps keep development from falling apart?

All metaphors are wrong, some are useful. Can this metaphor inspire testable predictions? Maybe?

11.02.2026 17:23 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

it's outside my field and above my pay grade, but I can try.

People sometimes talk about the genome as a "blueprint", but the DNA is not a map of the organism.

A better metaphor frames the genome as a "recipe", but then who is the cook? A recipe can't cook itself.

hal.science/hal-05491732

11.02.2026 17:23 πŸ‘ 4 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Philosophically, this replaces the substance-based view of reproduction (invariance by default, we explain change) with a process-based view (change by default, we explain stability), a better fit to living organisms, which are far-from-equilibrium organizations of processes.

10/11

11.02.2026 14:45 πŸ‘ 2 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

What is the genome’s role here? It is not a representation, code or instructions, but a transmissible constraint on development. In the same way as an enzyme is a constraint: it doesn’t change but acts by favoring certain reactions. Which reactions actually happen depend on the initial state.

9/11

11.02.2026 14:45 πŸ‘ 2 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
A dynamical perspective on biological reproduction Classically, biological reproduction is explained as the building of a new organism from replicated genomic instructions. The corresponding theoretical model is von Neumann's self-reproducing machine, which relies on an invariant universal constructor that can build any machine from instructions. However, the reproductive incompatibility of species and the diversity of developing processes speak against the existence of a universal constructor. Without a universal constructor, the genome as representation of the organism is circularly defined: what the genome represents is specified by the developmental processes represented by the genome.<p>I propose to take invariant reproduction not as a premise, but as an emergent dynamical property.</p><p>Reproduction is seen as the iteration of a transform that maps one generation to the next, a transform shaped by the genome. Invariant reproduction then occurs when a reproductive sequence converges to a fixed point. A reproductive sequence may also diverge, converge to a cycle (multigenerational life cycle), or to one of several fixed points (non-genomic inheritance). When it does converge, it is necessarily to a stable point, implying that development is robust to perturbations. Finally, speciation can be understood as a process by which reproductive transforms become mutually incompatible, that is, the basins of attractions of the fixed points do not overlap any more. In this view, the genome is an inheritable constraint on development, not a representation of the organism. I suggest that this dynamical framework is a more coherent model of biological reproduction than von Neumann's computational framework.</p>

New preprint: β€œA dynamical perspective on biological reproduction”

hal.science/hal-05491732

The prevailing view is that an organism reproduces by building a new organism from its genomic representation, like von Neumann’s self-reproducing machine. But...
1/11

11.02.2026 14:45 πŸ‘ 10 πŸ” 3 πŸ’¬ 2 πŸ“Œ 1

Antonio Damasio, neuroscientist. 30/

bsky.app/profile/drja...

en.wikipedia.org/wiki/Antonio...

06.02.2026 22:08 πŸ‘ 27 πŸ” 4 πŸ’¬ 2 πŸ“Œ 4

Ed Boyden, neuroscientist. 25/

bsky.app/profile/merz...

en.wikipedia.org/wiki/Edward_...

05.02.2026 01:40 πŸ‘ 25 πŸ” 3 πŸ’¬ 2 πŸ“Œ 1

Richard Axel, biologist. 35/

bsky.app/profile/maju...

en.wikipedia.org/wiki/Richard...

08.02.2026 17:23 πŸ‘ 13 πŸ” 3 πŸ’¬ 2 πŸ“Œ 0
Labeled cortical neurons projecting to the preBΓΆtC, the central pattern generator for breathing

Labeled cortical neurons projecting to the preBΓΆtC, the central pattern generator for breathing

A projection atlas of excitatory and inhibitory inputs to the

preBΓΆtzinger Complex:

substrates for multimodal breathing control

www.biorxiv.org/content/bior...

08.02.2026 18:12 πŸ‘ 16 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
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Temporal organization of odor responses in the human olfactory bulb

www.researchsquare.com/article/rs-8...

26.01.2026 05:56 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

How do past sensory experiences prepare us for new ones? Our new paper tackles this long-standing question, revealing a role for activity sequences in the olfactory bulb. Excited to share our work led by @jonvgill.bsky.social with Mursel Karadas & Shy Shoham
www.biorxiv.org/content/10.6...

26.01.2026 03:05 πŸ‘ 28 πŸ” 6 πŸ’¬ 1 πŸ“Œ 1
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At @elife.bsky.social you can now include explainer videos with every figure. Like going to a seminar while you engage with the paper. First example here elifesciences.org/articles/106...

Click the arrows next to each figure to get a video of @mathiassablemeyer.bsky.social explaining it for you!

22.01.2026 18:16 πŸ‘ 109 πŸ” 22 πŸ’¬ 3 πŸ“Œ 6
Odor Sampling Bags Enable Reliable Delivery of Controlled Odor Concentrations Precise control of odorant concentration is essential for reliable olfactory research, yet existing odorant delivery methods often suffer from solvent interactions and dilution from ambient air, limiting stimulus consistency in olfactory research. We developed an odor sampling bag system using Nalophan plastic to create a closed headspace with air as the carrier medium, eliminating solvent-related variability and ambient air dilution. In two independent experiments, 15 trained panelists each rated the perceived intensity of seven concentrations of benzaldehyde and 2-heptanone using both gas-sampling bags and glass jars. Bags produced higher maximum perceptual intensities (p < 0.001) and greater test-retest reliability than jars (Experiment 1: r = 0.89 vs. 0.81, p < 0.001; Experiment 2: r = 0.86 vs. 0.72, p < 0.001). Notably, the two tested odorants showed different maximum intensities in bags (p < 0.001) but not jars (p = 0.85), suggesting bags better preserve odorant-specific concentration differences. Photoionization detector measurements confirmed stable headspace concentrations over time, comparable to industry-standard Tedlar bags. This cost-effective approach offers improved stimulus control for olfactory psychophysics research. ### Competing Interest Statement Joel D. Mainland serves on the scientific advisory board of Osmo Labs, PBC and receives compensation for these activities. National Institutes of Health, https://ror.org/01cwqze88, F32 DC020380, T32 DC000014, U19 NS112953, R01 DC017757, R01 DC021663

1/3 The humble glass jar is a workhorse in olfactory research, but comes w/ hidden problems:
- Unknown headspace concentration
- Concentration dilution by ambient air

These add noise to odor measurements.

Our preprint introduces something new, something bag.πŸ§ͺ @jmainland.bsky.social & Matt Andres

16.01.2026 20:29 πŸ‘ 8 πŸ” 4 πŸ’¬ 1 πŸ“Œ 0
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This paper changed my life: John Tuthill reflects on the subjectivity of selfhood Wittlinger, Wehner and Wolf’s 2006 β€œstilts and stumps” Science paper revealed how ants pull off extraordinary feats of navigation using a biological odometer, and it inspired Tuthill to consider how…

A 2006 Science paper revealed how ants pull off extraordinary feats of navigation. In the latest β€œThis paper changed my life,” @tuthill.bsky.social discusses how this paper inspired him to consider how other insects sense their own bodies.

#neuroskyence

www.thetransmitter.org/this-paper-c...

12.01.2026 14:51 πŸ‘ 17 πŸ” 5 πŸ’¬ 0 πŸ“Œ 1
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Less than two weeks left to apply for the Cephalopod Neuroscience Gordon Conference! An exciting lineup of speakers and posters, and financial aid is available upon request. πŸ™πŸ¦‘
www.grc.org/cephalopod-n...

06.01.2026 16:41 πŸ‘ 63 πŸ” 24 πŸ’¬ 1 πŸ“Œ 1

Bye bye 2025, a divisive year,
with many divisors: 3, 5, 9, 15, 25, 27, 45, 75, 81, 135, 225, 405, 675.

Happy 2026 = 2*1013
Just two primes

Cheers!

31.12.2025 16:32 πŸ‘ 22 πŸ” 6 πŸ’¬ 1 πŸ“Œ 0
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A new comparative study of seven lizard species, including chameleons and bearded dragons, finds an ancient sleep rhythm conserved over millennia.

By Lauren Schenkman

www.thetransmitter.org/sleep/snoozi...

29.12.2025 18:34 πŸ‘ 37 πŸ” 13 πŸ’¬ 0 πŸ“Œ 1
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Adam Kampff’s passion for understanding and explaining the world was unmatched. Living by example and not ever compromising on his dreams, Adam was uncanny in making people realize they can learn and understand anything and everything. Keep his dream alive!
In his own words: tinyurl.com/ye29csw3

15.12.2025 13:16 πŸ‘ 39 πŸ” 11 πŸ’¬ 1 πŸ“Œ 0
olfactory bulb braincase size Ξ± OR gene repertoire size

olfactory bulb braincase size Ξ± OR gene repertoire size

The olfactory bulb endocast as a proxy for mammalian olfaction
www.pnas.org/doi/full/10....

12.12.2025 17:16 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0