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QI@CSHL

@qiatcshl

Quantitative Imaging: From Acquisition to Analysis course at Cold Spring Harbor Laboratory / Posts by QI Instructors & TAs Applications for QI 2026 are due 1/30! https://meetings.cshl.edu/courses.aspx?course=C-QICM

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Posts 23.11.2024
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Latest posts by QI@CSHL @qiatcshl

🔬 🖥️ 📊!

28.01.2026 19:44 👍 2 🔁 1 💬 0 📌 0

Don't let the price of QI deter you!
QI offers financial aid through NCI, HHMS, and @bioimagingna.bsky.social.
Include a brief statement of need with your application.
Aid is distributed by CSHL (not the course instructors).
Many of our students - sometimes all! - receive significant support.

28.01.2026 18:57 👍 3 🔁 5 💬 0 📌 0

Applications for QI 2026 are due on Friday! 🔬 🖥️ 📊 😺

28.01.2026 18:45 👍 3 🔁 3 💬 0 📌 0
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💻 Apply to our beginner-friendly Boston Bioimage Analysis Course!

Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!

Fee waivers available thanks to funding from @bioimagingna.bsky.social!

🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/

08.05.2025 14:39 👍 18 🔁 9 💬 0 📌 2
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‼BREAKING‼
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!

Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025

22.04.2025 14:55 👍 19 🔁 12 💬 0 📌 2
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Slick t-shirt design for @qiatcshl.bsky.social made by @sciencedoodles.bsky.social featuring fan favorite the bench scope

07.04.2025 16:28 👍 15 🔁 5 💬 0 📌 0
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Happy Expansion Microscopy Day at Quantitative Imaging @qiatcshl.bsky.social

07.04.2025 21:30 👍 18 🔁 1 💬 2 📌 0
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Our latest preprint www.biorxiv.org/content/10.1..., describes Willi Stepp’s project to make smart microscopy even gentler by doing event detection in phase contrast. We developed neural networks to detect mito-LD and mito-lysosome contacts, as well as mitochondrial pre-fission constrictions.

06.04.2025 11:44 👍 61 🔁 16 💬 2 📌 1
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Light sheet baby!! QI2025

06.04.2025 00:59 👍 15 🔁 3 💬 1 📌 0
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Check out their time lapse! 😍🔬Not pictured: the transmitted light image to check for photodamage!

05.04.2025 16:57 👍 5 🔁 0 💬 0 📌 0
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Congratulations to students Jana & Michal for winning the Stayin' Alive challenge: acquiring a live cell time lapse with minimal photodamage! #stayinalive

05.04.2025 16:57 👍 11 🔁 0 💬 1 📌 0
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Celebrating the last analysis lab at @qiatcshl.bsky.social in style. Friday night disco music (🤮) and bioimage analysis (😃)

05.04.2025 01:35 👍 15 🔁 3 💬 0 📌 0
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Our first prize winners for their confocal data presentation: 'Pinhole Pros' Federico & Naly!

04.04.2025 13:46 👍 10 🔁 2 💬 0 📌 0
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Analysis team cooking up some cellprofiler magic at @qiatcshl.bsky.social

29.03.2025 19:50 👍 15 🔁 1 💬 0 📌 0
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Congratulations to students @nancypaniagua.bsky.social & Michal for placing 1st & 2nd place in our @ilastik-team.bsky.social pixel classifier challenge to segment with the least amount of annotations! #lazyannotationsftw

03.04.2025 14:44 👍 11 🔁 4 💬 0 📌 0
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The students (totally) loved our TIRF lab! Check out this fluorescein solution sample we used to visualize internal reflection on the scope - 📸 by student Augusto Berrocal

02.04.2025 13:49 👍 8 🔁 1 💬 0 📌 0
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Week 2! 🔬🖥️📊

01.04.2025 20:20 👍 3 🔁 0 💬 0 📌 2
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Our image analysis expert instructors, @bethcimini.bsky.social, @damiandn.bsky.social, @florianjug.bsky.social & Hunter Elliott, are in full swing!

31.03.2025 15:28 👍 10 🔁 1 💬 0 📌 0
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It's TIRF time again at QI!!! 🎉 🔬Check out @jencwaters.bsky.social's infamous TIRF demo to understand the principle behind total internal reflection vs refraction! #gonetirfing #criticallyawesome

31.03.2025 15:22 👍 22 🔁 5 💬 0 📌 0
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Our openSPIM is officially up and running to image the latest catch of the day! Fueled by pymmcore-plus & pymmcore-gui! 💪⚡🔬 pymmcore-plus.github.io/pymmcore-plus/ github.com/pymmcore-plu...

29.03.2025 14:42 👍 22 🔁 8 💬 0 📌 1
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Our openSPIM is officially up and running to image the latest catch of the day! Fueled by pymmcore-plus & pymmcore-gui! 💪⚡🔬 pymmcore-plus.github.io/pymmcore-plus/ github.com/pymmcore-plu...

29.03.2025 14:42 👍 22 🔁 8 💬 0 📌 1
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I spy with my little eye...a sneak peek of our light sheet microscopy lab samples! Perks of being a
@cshlnews.bsky.social course is access to lots of great sample collecting spots! #catchoftheday #tardigrades

29.03.2025 14:35 👍 12 🔁 5 💬 0 📌 0
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4 out of 16 ❤️❤️❤️🔬🔬🔬🔬🔬 @qiatcshl.bsky.social

29.03.2025 13:48 👍 4 🔁 1 💬 0 📌 0

Another wonderful @sciencedoodles.bsky.social creation!

29.03.2025 00:09 👍 8 🔁 2 💬 0 📌 0
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After learning about PSFs, our students are excited about the best microscopy model system: beads! Thanks @leicamicrosystems.bsky.social, @nikonmicro.bsky.social, & ASI for supporting our course! #fluorescentbeads #TheBeadles

28.03.2025 20:10 👍 9 🔁 1 💬 0 📌 0
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Our new course logo, by @sciencedoodles.bsky.social

28.03.2025 19:58 👍 7 🔁 1 💬 0 📌 1
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Love this place… 🥰
@qiatcshl.bsky.social @cshlaboratory.bsky.social

28.03.2025 19:10 👍 13 🔁 2 💬 0 📌 0

Thank you! And we teach best practices for cleaning objectives as well - both on Day 1.

27.03.2025 21:27 👍 1 🔁 0 💬 0 📌 0
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Demonstrating how local environment impacts fluorescence 🔬🧪🥼@qiatcshl.bsky.social

26.03.2025 02:53 👍 9 🔁 2 💬 0 📌 0
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Full calendar, great students, dedicated instructors & TAs, and nonstop learning! 🔬🖥️ 📊#microscopybootcamp

27.03.2025 18:46 👍 6 🔁 1 💬 0 📌 0