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Thomas Naake

@tnaake

Group leader at PTB Braunschweig and professor at TU Braunschweig working in computational proteomics and metabolomics

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07.02.2025
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Latest posts by Thomas Naake @tnaake

πŸ‘‰ I’d greatly appreciate it if you could reshare this post to help spread the word to potential candidates.

#PhDOpportunity #ComputationalBiology #Proteomics #Metabolomics #Bioinformatics #AcademicResearch

22.08.2025 11:53 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Doktorandin / Doktorand (m/w/d) Computational Metabolomics und Proteomics – Bioinformatik (25-157-3B) bei Physikalisch-Technische Bundesanstalt (PTB) Wir suchen: Doktorandin / Doktorand (m/w/d) Computational Metabolomics und Proteomics – Bioinformatik (25-157-3B) (Teilzeit) β€’ Bundesallee 100, 38116 Braunschweig-Lehndorf-WatenbΓΌttel, Deutschland

- a collaborative, interdisciplinary environment with leading experts

πŸ“ If youβ€”or someone in your networkβ€”are looking to start a PhD in this area, check out the details here: ptbjobs.softgarden.io/job/58811985...
Application deadline: 22 September 2025

22.08.2025 11:53 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Doktorandin / Doktorand (m/w/d) Computational Metabolomics und Proteomics – Bioinformatik (25-157-3B) bei Physikalisch-Technische Bundesanstalt (PTB) Wir suchen: Doktorandin / Doktorand (m/w/d) Computational Metabolomics und Proteomics – Bioinformatik (25-157-3B) (Teilzeit) β€’ Bundesallee 100, 38116 Braunschweig-Lehndorf-WatenbΓΌttel, Deutschland

innovative computational methods to tackle complex biological questions.

πŸ” The position offers:
- state-of-the-art research at the intersection of bioinformatics, systems biology, and data science
- the chance to work with large-scale omics datasets

22.08.2025 11:53 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
LinkedIn This link will take you to a page that’s not on LinkedIn

🚨 PhD Opportunity in Computational Proteomics & Metabolomics 🚨

I am excited to announce an opening for a PhD position in the field of computational proteomics and metabolomics in my group at PTB. This is a fantastic opportunity for motivated candidates who are passionate about developing

22.08.2025 11:53 πŸ‘ 2 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

Thank you, Biswa!

05.07.2025 20:12 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Thanks, Constantin!

03.07.2025 10:40 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

#computationalbiology #massspectrometry #bioinformatics #proteomics #metabolomics #phd #researchopportunity #openposition #systemsbiology #openscience #ML #AI #PTB #TUBraunschweig [/7]

03.07.2025 07:29 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

I’m especially excited about the opportunity to collaborate with brilliant scientists at PTB and Technische UniversitΓ€t Braunschweig, and to contribute to impactful, high-quality research in computational mass spectrometry. [6/n]

03.07.2025 07:28 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

πŸ“© Please feel free to share this post or contact me if you know someone who might be interested in the PhD positions. [5/n]

03.07.2025 07:26 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

πŸ‘©β€πŸ”¬πŸ‘¨β€πŸ”¬ If you are interested in computational biology, bioinformatics, or omics data science (and have completed your Master’s), keep an eye out β€” we will soon be recruiting two PhD candidates to join the group. In the meantime, feel free to reach out directly if you're interested! [4/n]

03.07.2025 07:25 πŸ‘ 4 πŸ” 0 πŸ’¬ 3 πŸ“Œ 0

We aim to develop robust, open, and reproducible computational workflows to improve data standardisation, quality, and interpretability across large-scale mass spectrometry platforms, using statistical, machine learning, and deep learning methods. [3/n]

03.07.2025 07:25 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

led by Prof. Dr. Gavin O'Connor.

πŸ”¬ Our focus will be on advancing computational metabolomics and proteomics β€” key areas within systems biology that leverage mass spectrometry data to uncover biological insights. [2/n]

03.07.2025 07:24 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

πŸš€πŸš€ πŸš€ Exciting News! πŸš€ πŸš€ πŸš€

After more than 4.5 fantastic years at @embl.org, I am excited to announce that from 1 August 2025, I’ll be starting my own research group at Physikalisch-Technische Bundesanstalt (PTB) in Braunschweig, Germany β€” as part of the Biochemistry Department [1/n]

03.07.2025 07:23 πŸ‘ 11 πŸ” 5 πŸ’¬ 3 πŸ“Œ 0
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SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python De Graeve et al., (2025). SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python. Journal of Open Source Software, 10(109), 8070, https://doi.org/10.21105/joss.08070

Thrilled to share that our paper "SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python" was published in @joss-openjournals.bsky.social πŸ₯³

This was a great community effort! Big πŸ™Œ to all contributors!

#MassSpectrometry + #rstats + #Python πŸ‘‰ doi.org/10.21105/jos...

20.05.2025 07:15 πŸ‘ 9 πŸ” 4 πŸ’¬ 1 πŸ“Œ 0
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SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python De Graeve et al., (2025). SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python. Journal of Open Source Software, 10(109), 8070, https://doi.org/10.21105/joss.08070

Happy to share that our article on SpectriPy is now online: joss.theoj.org/papers/10.21... Combining best of both worlds, #RStats and #Python! #metabolomics #lipidomics Thanks to @jorainer.bsky.social for leading this and thanks to all co-authors!

20.05.2025 12:05 πŸ‘ 6 πŸ” 6 πŸ’¬ 0 πŸ“Œ 0
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Wonderful and productive @eubic-ms.org Developers' Meeting in Neustift, South Tyrol, hacking proteomics and metabolomics software and metadata standards for five days!

10.02.2025 09:56 πŸ‘ 26 πŸ” 7 πŸ’¬ 0 πŸ“Œ 0
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Come work at the European Molecular Biology Laboratory in the beautiful science & university city Heidelberg as a Research Software Engineer on R/Bioconductor tools for biological data science and AI !

embl.wd103.myworkdayjobs.com/EMBL/job/Hei...

31.01.2025 16:03 πŸ‘ 34 πŸ” 17 πŸ’¬ 2 πŸ“Œ 1