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Daniel Ukaegbu

@darniee

PhD student in computational toxicology @johnshopkins.bsky.social

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18.11.2024
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Latest posts by Daniel Ukaegbu @darniee

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Professor Jamie Spangler has been awarded the 2025 President’s Frontier Award for her groundbreaking work in molecular immunoengineering. Her pioneering research is shaping the future of therapies for cancer, autoimmune diseases, and more. https://bit.ly/4pMVsfo

16.01.2026 20:54 πŸ‘ 58 πŸ” 11 πŸ’¬ 1 πŸ“Œ 1

'Build something complex in a domain where you are already an expert and iterate on it' is a much more sophisticated and realistic message than 'AI will do all the work so we won't need experts at all'.

03.01.2026 18:31 πŸ‘ 36 πŸ” 1 πŸ’¬ 3 πŸ“Œ 0
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What the KENNEDY Center used to be…

Remember that time Aretha Franklin performed at the 2015 Kennedy Center Honors, paying tribute to Carole King, who co-wrote β€œYou Make Me Feel Like A Natural Woman,” and it brought a tear to Obama’s eye and everyone to their feet? And Carole King’s reaction. Wow.

01.01.2026 05:04 πŸ‘ 19118 πŸ” 4690 πŸ’¬ 1066 πŸ“Œ 498
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Complement-producing adventitial fibroblasts form an IL-33 alarmin hub that maintains ILC2s during airway allergy Atakkatan et al. identify a distinct subset of C3+IL-33+ adventitial fibroblasts (AFs) that drives allergic inflammation by maintaining ILC2 responses. In turn, ILC2-derived IL-13 supports AF function...

What maintains ILC2s in airway allergy? We report a complement-producing stromal niche forming an IL-33 alarmin hub sustaining ILC2s.
Thanks to the JHU Catalyst Award for the support!!
cc @deniswirtz.bsky.social @cp-cellreports.bsky.social @hopkinsmedicine.bsky.social
www.cell.com/cell-reports...

24.12.2025 17:26 πŸ‘ 10 πŸ” 5 πŸ’¬ 1 πŸ“Œ 0
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Antibody-lectin chimeras for glyco-immune checkpoint blockade - Nature Biotechnology Cancer immunotherapy benefits from antibody-lectin chimeras that block glyco-immune checkpoints.

Out now: We present antibody-lectin chimeras (AbLecs) as a molecular platform to target sugars, or glycans, for cancer immunotherapy.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
@mitkochinstitute.bsky.social @mitdeptofbe.bsky.social @mitcheme.bsky.social @stanford-chemh.bsky.social

16.12.2025 15:01 πŸ‘ 34 πŸ” 17 πŸ’¬ 1 πŸ“Œ 2
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I just loved this and thought I’d share. πŸ™

06.12.2025 19:08 πŸ‘ 446 πŸ” 79 πŸ’¬ 24 πŸ“Œ 3
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I started my blog post 16 years ago!
It's really amazing that I can keep it :)

05.12.2025 11:29 πŸ‘ 5 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Introducing gRNAde: our own little "AlphaGo Moment" for RNA design! πŸ§¬πŸš€

πŸ“: tinyurl.com/gRNAde-paper

Unlike proteins, RNA design has long relied on "wisdom of the crowd" (human experts) or the slow crawl of directed evolution β€” gRNAde changes that! πŸ§΅πŸ‘‡

03.12.2025 06:45 πŸ‘ 28 πŸ” 6 πŸ’¬ 2 πŸ“Œ 5
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$100 million prize goes to dynamic duo aiming to stop next pandemic before it starts Two scientists who are fast friends, one Nigerian and one American, have won the MacArthur Foundation's 100&Change competition for their network to catch the next disease with pandemic potential.

Two scientists who are fast friends, one Nigerian and one American, have won the MacArthur Foundation's 100&Change competition for their network to catch the next disease with pandemic potential.

22.11.2025 20:03 πŸ‘ 1246 πŸ” 249 πŸ’¬ 13 πŸ“Œ 15
Uche Medoh

Uche Medoh

For solving a 50-year mystery by uncovering the machinery behind BMP, a molecule with protective effects against various disorders, Uche Medoh is the winner of the 2025 Science & SciLifeLab Prize for Young Scientists.

πŸŽ‰ Learn more about the work: https://scim.ag/4qVpK1a

13.11.2025 20:34 πŸ‘ 109 πŸ” 25 πŸ’¬ 0 πŸ“Œ 3
50 % Cloud Restaurant, Yunnan, China

50 % Cloud Restaurant, Yunnan, China

50 % Cloud Restaurant, Yunnan, China

50 % Cloud Restaurant, Yunnan, China

50 % Cloud Restaurant, Yunnan, China

50 % Cloud Restaurant, Yunnan, China

50 % Cloud Restaurant, Yunnan, China

50 % Cloud Restaurant, Yunnan, China

50 % Cloud Restaurant, Yunnan, China
Cheng Chung Design transformed artist Luo Xu’s red-brick installation into a restaurant and art lounge. Its organic arches, skylights and flowing brick forms merge architecture, nature and art into a unique multi-sensory dining experience.

03.11.2025 20:02 πŸ‘ 75 πŸ” 10 πŸ’¬ 1 πŸ“Œ 1
My 11-year-old sitting with her pile of Halloween candy, sorting it into a bar graph

My 11-year-old sitting with her pile of Halloween candy, sorting it into a bar graph

We have progressed from data collection to data analysis.

01.11.2025 00:31 πŸ‘ 34744 πŸ” 4124 πŸ’¬ 982 πŸ“Œ 366
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Nice to see he’s bringing a new album out.

29.10.2025 19:12 πŸ‘ 22 πŸ” 1 πŸ’¬ 3 πŸ“Œ 0
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Achira Building foundation simulation models for drug discovery

Achira is growing! We’re looking for talented software engineers, ML research engineers, and AI/ML scientists to join our team in building foundation simulation models to power the future of drug discovery.

Apply at achira.ai

24.10.2025 12:20 πŸ‘ 11 πŸ” 6 πŸ’¬ 1 πŸ“Œ 2
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MacArthur Foundation Announces 2025 β€˜Genius Grant’ Winners

I see that @kelbadry.bsky.social has won a MacArthur Foundation fellowship (Genius award)! Congratulations πŸ§ͺπŸ”­

www.nytimes.com/2025/10/08/a...

14.10.2025 13:55 πŸ‘ 94 πŸ” 15 πŸ’¬ 0 πŸ“Œ 1
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β€˜Google for DNA’ brings order to biology’s big data MetaGraph compresses vast data archives into a search engine for scientists, opening up new frontiers of biological discovery.

"The Internet has Google. Now biology has MetaGraph. Detailed today in Nature1, the search engine can quickly sift through the staggering volumes of biological data housed in public repositories." πŸ§ͺ www.nature.com/articles/d41... anyone try this? What's it like?

09.10.2025 22:25 πŸ‘ 16 πŸ” 6 πŸ’¬ 1 πŸ“Œ 0
Immunity researchers win the 2025 Nobel Prize in Physiology or Medicine

Immunity researchers win the 2025 Nobel Prize in Physiology or Medicine

Immunity researchers win the 2025 #NobelPrize in Physiology or Medicine

Mary E. Brunkow, Fred Ramsdell and Shimon Sakaguchi receive the prize for understanding how the immune system is kept in check. Read more: cen.acs.org/people/nobel...

#chemsky #immunosky πŸ§ͺ

06.10.2025 13:19 πŸ‘ 84 πŸ” 14 πŸ’¬ 0 πŸ“Œ 1

πŸ’Έ 🐦 πŸ§ͺ

05.10.2025 13:41 πŸ‘ 7 πŸ” 5 πŸ’¬ 0 πŸ“Œ 0

Very happy this paper got accepted to NeurIPS 2025 as a Spotlight! 😁

Main takeaway: In mechanistic interpretability, we need assumptions about how DNNs encode concepts in their representations (eg, the linear representation hypothesis). Without them, we can claim any DNN implements any algorithm!

01.10.2025 15:00 πŸ‘ 25 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
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I’d like to take this opportunity to rebrand our lab's prior research as creating AI Virtual Cells! | Anne Carpenter I’d like to take this opportunity to rebrand our lab's prior research as creating AI Virtual Cells! πŸŽ‰ πŸ˜… Like many others released lately, ours are mostly one-trick ponies, but we have a stable ...

I’m not sure the linked in crowd is getting my snark about Virtual Cells πŸ˜„πŸ«£

www.linkedin.com/posts/anneca...

13.07.2025 13:31 πŸ‘ 34 πŸ” 3 πŸ’¬ 4 πŸ“Œ 0
Drawing simple protein–ligand interaction diagrams with the RDKit – RDKit blog Quick, but useful

This week's #RDKit blog post shows how to create simple protein--ligand interaction diagrams.
I think there's potential to take this a bit further...
greglandrum.github.io/rdkit-blog/p...

26.09.2025 15:58 πŸ‘ 15 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
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Jerusalem is an amazing city!

23.09.2025 18:35 πŸ‘ 9 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
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Our new workflow maps whole human fallopian tubes at single-cell resolution. In healthy FTs, we detected (many) STIC precancerous lesions.

We can also simulate virtual sectioning as done in the clinic and show how current protocols undersample FTs.

More here:
www.biorxiv.org/content/10.1...

23.09.2025 16:30 πŸ‘ 13 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
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At 15 years old, Owen Cooper becomes the youngest male acting winner in #Emmys history.

15.09.2025 01:43 πŸ‘ 976 πŸ” 95 πŸ’¬ 28 πŸ“Œ 26

Congratulations

29.08.2025 11:04 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Exposure to some common Pfas changes gene activity, new study finds Findings help decipher mechanisms through which β€˜forever chemicals’ cause disease, aiding in treating health problems

🧬 PFAS change gene activity

A new study of US firefighters shows some PFAS chemicals alter how genes work, linking them to cancers, autoimmune disease, and neurological disorders.

πŸ”— www.theguardian.com/environment/...

#SciComm #PFAS #Health πŸ§ͺ

17.08.2025 04:50 πŸ‘ 78 πŸ” 31 πŸ’¬ 0 πŸ“Œ 2
Anne Carpenter at 2025 ABI at MIT: How Imaging Propels Medicine in the Age of AI
Anne Carpenter at 2025 ABI at MIT: How Imaging Propels Medicine in the Age of AI YouTube video by Anne Carpenter

My talk at Accelerating Bio-Innovation gives a flavor for how cell-based images are propelling new treatments:

www.youtube.com/watch?v=kP-G...

04.08.2025 20:35 πŸ‘ 15 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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GitHub - tlint101/pharmacophore-toolkit: Generate simple pharmacophore models from RDKit Generate simple pharmacophore models from RDKit. Contribute to tlint101/pharmacophore-toolkit development by creating an account on GitHub.

My first post and I would like to plug my project - pharmacophore-toolkit. I thought others in the #cheminformatics, #molecularmodeling, #drugdiscovery, or the #chemsky #compchem community would find it helpful. github.com/tlint101/pha...

23.07.2025 10:35 πŸ‘ 13 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0
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New Practical Cheminformatics Post
patwalters.github.io/Three-Papers...

22.07.2025 13:40 πŸ‘ 17 πŸ” 9 πŸ’¬ 0 πŸ“Œ 2
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Barack Obama encourages young men to have more diverse friend groups:

β€œI had a gay professor in college […] who became one of my favorite professors and was a great guy and would call me out when I started saying stuff that was ignorant. You need that to show empathy and kindness.”

21.07.2025 19:55 πŸ‘ 265 πŸ” 23 πŸ’¬ 7 πŸ“Œ 6