Nextflow Training Week is Back on June 23-27, 2025! π
This free, self-paced training is perfect for newcomers looking to get started with Nextflow
Sign up now: hubs.la/Q03sDmpr0
To continue advancing the vision that scientific innovation runs on software, we are thrilled to announce that Seqera has closed itβs Series B funding, led by Addition, with participation from Speedinvest, Talis, Amino Collective, BoxOne, and SNR!
Learn more: hubs.la/Q03lcmf20
πEpisode 50 of the @nextflow.io Podcast is here!
Host @ewels.bsky.social sits down with @kbestak.bsky.social, a PhD student and active contributor to the @nf-co.re community, working at the cutting edge of #SpatialOmics and #microscopy.
π§Catch it here: hubs.la/Q03fVPNx0
I'll be speaking in the session "Managing Data Analyses with Nextflow and nf-core in Bioinformatics Core Facilities" on Monday, March 24 chaired by Charlie Whittaker along with @lopantano.bsky.social and Ramiro Barrantes-Reynolds.
More details about the event here: web.cvent.com/event/924ddc...
Iβm excited to share I will be speaking at #ABRF2025βs Annual Meeting in Las Vegas in March. This meeting brings together scientific leaders of biomolecular and bioinformatics core facilities to discuss how we can maximize the impact these valuable groups have within their institutions.
We've been working really hard on the new Nextflow training materials and they've turned out great. Take advantage of them on your own or by doing a watch party with a group next week during our Nextflow training week. π
I'm doing a webinar next week about instrument-to-analysis automation of bioinformatics data processing!
Super excited for the distributed nf-core hackathon! We've got 36+ local sites being organized in over 20 countries! Registration is now open!
This is a call out to bioinformatics developers that we are working to get all of NF-Core pipelines (and by extension most of Bioconda) to support Arm.
Spot price for c8g.16xlarge (Graviton4) and it is below 60Β’/hr. Or < 1Β’ per physical CPU if your application supports Arm ...
Attending #SLAS2025? Don't miss our exclusive Exhibitor Tutorial at 2:00 PM today in Room 24C!
In this talk, we will discuss how @nextflow.io and Seqera are simplifying the analysis of large-scale sequencing and cell imaging data!
π Can't attend? Get the recording instead: hubs.la/Q034lfYZ0
I'm attending SLAS! Come find me at our booth if you want to chat about anything Nextflow-related. I'll also be presenting a tutorial about setting up event-driven bioinformatics automation using Nextflow and Seqera Platform. I hope to see some of you there!
One of my favorite talks at the @nextflow.io summit was @kenibrewer.bsky.social's talk on how to NOT contribute to nf-core (using nf-core in your organization). He wrote a nice post on the @nf-co.re blog on building an nf-core style modules library for your organization seqera.io/blog/buildin...
I wrote a blog article about some of the best parts of nf-core's modular tooling and how to use it within your own organization. This was an extension of a talk I gave at the Nextflow Summit late last year.
Read or watch however you prefer!
www.youtube.com/watch?v=Pn_B...
I didn't do any work directly on the OLE project during my time in the Breaker Lab, but I'm convinced that OLE is one of the most exciting bacterial #ncRNA to be discovered in recent years. Definitely check out this preprint if you'd like to see some really exciting RNA #cryoEM structures.
Our next hackathon is rapidly approaching! π
- March 24-26, 2025
- Online / local distributed sites
For the distributed sites, WE NEED YOU! π―
If you're able to book a meeting room and host a local site, fill in the local site registration form:
nf-co.re/events/2025/...
Know someone looking for a new start in 2025? π
Colleagues of #BlueSci, help flex this new social muscle! π¦Ύ
Exciting news! πYou can now try Chai-1, the SOTA model for biomolecular structure prediction by Chai Discovery, with Seqera!
π Check it out: github.com/seqeralabs/n...
Weβre thrilled to share our Nature Methods review on #CellPainting β your go-to resource for mastering Cell Painting! From MOA and toxicity prediction to contributing to candidate drugs in clinical trials, weβve distilled 10 years of insights!
πPinned Post: Welcome to the papers with code feed!
bsky.app/profile/did:...
Papers from PubMed, bioRxiv, Bature, PLoS, etc, with links to GitHub will be included here. Anyone can post to this feed.
See also: blog.stephenturner.us
Really exciting seeing the results from this incredible effort come out!
Are you looking for job opportunities where your #Nextflow skills are valued? Check the list we've compiled below. π #Jobs #Opportunities
This is really cool, definitely worth a look for anyone running in environments where container security is of concern (which should be.. everywhere, right?)
π¦πβ¨
The magic here for me is being able to automatically halt pipeline runs if new container CVEs are released. Totally hands off but safe.
Really exciting to see @valenceai.bsky.social open-sourcing a large, curated, FAIR resource for #QuantumMechanics datasets. Pre-computing missing values needed to train #ML models is also fantastic from a #GreenAlgorithms perspective.
#OpenScience
I'm really sad to see Spring Science winding down. Having worked closely with them in a previous role during a software evaluation, I was incredibly impressed by the quality of their tooling and the caliber of their team.
https://x.com/kamens/status/1858585137690407038
Love seeing the new @seqera.io AI starting to be used for real-world uses, after we've been testing it with toy examples for so long.. π§ͺ
Great little blog post by Lorena! π
lpantano.github.io/post/2024/ne...
If you already have the Nextflow VSCode extension installed be sure to update to the latest version because it is π₯π₯π₯.
The language server that the extension includes has other cool implications for the future of Nextflow tooling. Attend the webinar for details!
If you missed the Nextflow Summit, this is a great way to catch up on major innovations coming to the Nextflow ecosystem.
Seqera AI in particular is exceptional at writing proper DSL2 Nextflow code which has been a major frustration of mine with other code assistants.
Highly recommend!
Are you looking for job opportunities where your #Nextflow skills are valued? Check the list we've compiled below. #Jobs #Opportunities
We believe in a future where science is open to all. Where community is the driving force of discovery.
With no limits on knowledge, technology can take humanity to new frontiers.
We are here to advance science for everyone through software.
www.youtube.com/watch?v=uq5G...
Could I get added as well? Thanks!
