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Agustin Corbat

@acorbat

Physicist, image analyst and 🔬 | Automation and teaching fan #Python #Pi | #bioimage #analyst at @biif_sweden

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18.11.2024
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Latest posts by Agustin Corbat @acorbat

Introduction to BioImage Analysis at KHIPUx 2026 4 hour theoretical and hand on workshop on introduction to bioimage analysios using Napari. Students will develop a quick workflow using napari assistant on the first half and apply CellPose on the se...

¿Te lo perdiste? Todo el material es Open Science y ya está en Zenodo:

📊 Slides: doi.org/10.5281/zeno...
💻 Material: doi.org/10.5281/zeno...

¡Gracias @khipu-ai.bsky.social por la invitación y hacer el evento posible! 🌎✨ #KhipuX #AI #Bioimaging

25.02.2026 15:43 👍 1 🔁 0 💬 0 📌 0

También dicté el workshop "Introduction to Bioimage Analysis". Cubrimos desde teoría hasta práctica con ejemplos reales. El nivel de los participantes fue increíble; el futuro de la bioimagen está en muy buenas manos. 🔬🤖

25.02.2026 15:43 👍 1 🔁 0 💬 1 📌 0

Fue un placer debatir sobre "Building regional capacity in AI" junto a Andrea Lara, David Brito y @hernanmn.bsky.social. Discutimos cómo potenciar el capital humano en Latam para cerrar brechas tecnológicas y de datos propios. ¡La nueva generación está más que lista para el desafío! 🚀

25.02.2026 15:43 👍 1 🔁 0 💬 1 📌 0
Preview
KHIPUx Quito 2026 - AI in Bioimage & Medical Imaging Join us February 23-25, 2026 for a groundbreaking conference on democratizing AI in bioimage and medical imaging.

¡Qué energía en Quito!🇪🇨 Regreso de KhipuX Quito 2026 inspirado por el inmenso talento joven en nuestra región. Bajo el lema "Democratizing AI in Bioimage and Medical Imaging", vi a estudiantes con una determinación admirable por liderar el futuro de la IA. 🧵👇
biodecodinglab.github.io/khipux-quito...

25.02.2026 15:43 👍 2 🔁 0 💬 1 📌 0
🔬 Light-Sheet Image Analysis Workshop 2026

You can quickly go through the course material in this webpage too: bruvellu.github.io/light-sheet-...

21.01.2026 19:02 👍 0 🔁 0 💬 0 📌 0
🔬 Light-Sheet Image Analysis Workshop 2026

In the spirit of making all materials FAIR, we made them public on Zenodo. 🔓📑

Shoutout to Aníbal Vargas, @luzfuentealba.bsky.social, @charlottebuckley.bsky.social & the @lisium-chile.bsky.social crew for hosting us!

doi.org/10.5281/zeno...

#LightSheet #OpenScience #FAIR #Bioimaging

21.01.2026 19:02 👍 2 🔁 1 💬 1 📌 0
🔬 Light-Sheet Image Analysis Workshop 2026

Empowering the next generation of bioimaging experts! 🌎

After many months crafting the Lightsheet Image Analysis Workshop 2026 with @bruvellu.bsky.social & @cuencam15.bsky.social. Seeing students finally crack their toughest project data on day 5 made every hour of prep worth it! 🧵👇

21.01.2026 19:02 👍 13 🔁 4 💬 1 📌 0

Thank you very much @hernanmn.bsky.social for taking care of the organization!!!

21.01.2026 18:24 👍 1 🔁 0 💬 0 📌 0
LinkedIn This link will take you to a page that’s not on LinkedIn

Whether you’re in Quito or joining online, join us! Let’s make bioimage analysis accessible! 🤝🌎

📍 Hosted by UIDE 📅 Application Deadline: Jan 31 🔗 Register here: biodecodinglab.github.io/khipux-quito...

See you there!(3/3)

#KHIPUx #BioimageAnalysis #LatinAmerica #OpenScience #AI #MedicalImaging

21.01.2026 18:15 👍 0 🔁 0 💬 1 📌 0

This isn't just about the tech—it's about people. We’re bringing together students, researchers, and doctors to focus on: ✅ Ethical AI & Open Science ✅ Hands-on Bioimage workshops ✅ A collaborative hackathon 🧠💻 ✅ Regional impact for LatAm (2/3)

21.01.2026 18:15 👍 1 🔁 0 💬 1 📌 0
Preview
KHIPUx Quito 2026 - AI in Bioimage & Medical Imaging Join us February 23-25, 2026 for a groundbreaking conference on democratizing AI in bioimage and medical imaging.

Big news! 🚀 I’m excited to share that @khipu-ai.bsky.social is coming to Quito! 🇪🇨

biodecodinglab.github.io/khipux-quito...

It will be a 3-day event dedicated to democratizing AI for Bioimage and Medical Imaging in Latin America. My goal is to help build a strong, supportive community. 🧵 (1/3)

21.01.2026 18:15 👍 3 🔁 1 💬 1 📌 0
course schedule as a table. Available at the link in the post.

course schedule as a table. Available at the link in the post.

I'm teaching Statistical Rethinking again starting Jan 2026. This time with live lectures, divided into Beginner and Experienced sections. Will be a lot more work for me, but I hope much better for students.

I will record lectures & all will be found at this link: github.com/rmcelreath/s...

09.12.2025 13:58 👍 659 🔁 235 💬 12 📌 20

¿Después de arduas sesiones de adquisición de imágenes te topaste con un problema aún más complicado en el análisis de tus imágenes?

Vení a la última sesión de intercambio de experiencias de microscopía donde vamos a hablar de procesamiento y análisis de imágenes.

02.12.2025 14:08 👍 0 🔁 0 💬 0 📌 0
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📢 ¡La última sesión de IdEM On-Demand de 2025 organizada por @latambioimaging.bsky.social está a solo unos días!

Bonus Track: Procesamiento y análisis de imágenes
📅 4 de diciembre, 12:00 GMT-3
🎙️Agustín Corbat, Hernán Morales
🎤 Andréia Lo Costa
🔗Registrate aquí: docs.google.com/forms/d/e/1F...

02.12.2025 14:08 👍 0 🔁 0 💬 1 📌 0
GloBIAS Presentation at Latin America BioImaging Meeting Presentation about the Global BioImage Analysts' Society (GloBIAS) deliver at the LABI Meeting 2025 in Buenos Aires, Argentina.

For those who couldn't attend, or want a closer look, you can find the slides and poster here: zenodo.org/records/1763... and zenodo.org/records/1763....

17.11.2025 18:39 👍 2 🔁 0 💬 0 📌 0
Post image Post image

Thrilled to have presented @globias.bsky.social at the @latambioimaging.bsky.social Meeting last week! 🇦🇷🔬

I really enjoyed sharing our mission in both a lightning talk and with a poster. It was fantastic to connect with so many passionate bioimaging scientists!

Let's keep building this community!

17.11.2025 18:39 👍 9 🔁 2 💬 1 📌 0

Gemini was used to remove people from the picture.

10.11.2025 20:21 👍 0 🔁 0 💬 0 📌 0
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Wrapping up an amazing day at the @latambioimaging.bsky.social meeting! Honored to witness the presentation of the Honoris Causa degree to the legendary Carlos Bustamante. A truly inspiring way to conclude today's events. 👏
#Bioimaging #CarlosBustamante #Science #HonorisCausa #LABI

10.11.2025 20:21 👍 5 🔁 3 💬 1 📌 0
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Incredible kickoff by Lia Pietrasanta at the @latambioimaging.bsky.social meeting! Fantastic insights into microscopy in the region. Ready for an inspiring week!
#Bioimaging #Microscopy #LABI

10.11.2025 15:31 👍 5 🔁 1 💬 0 📌 0

We just hit 10 workshops submitted, with almost two weeks to go! Help us get to 20 before the last-day frantic mad dash? Teach your favorite tool today!

20.10.2025 14:52 👍 2 🔁 4 💬 0 📌 0

Time to implement this entire model! Focusing on accessible training and an open-source stack to truly democratize high-end quantitative imaging here. Where should we start?

17.10.2025 19:43 👍 0 🔁 0 💬 0 📌 0
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I would love to work as an imaging scientist! Gaining traction from the synergy between image acquisition, robust analysis, and system modeling is the most exciting frontier. It's the difference between being a step in a pipeline and understanding the experiment and system under study.

17.10.2025 19:43 👍 0 🔁 0 💬 1 📌 0
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Individual labs have natural turnover (grads, post-docs). When that specialized knowledge walks out, who holds it? The facility staff. We are the necessary knowledge buffer, stabilizing expertise, protocols, and best practices for the long haul. Thank you @ahklemm.bsky.social for teaching me this!!

17.10.2025 19:43 👍 1 🔁 0 💬 1 📌 0
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I presented my views on Facilities at the 🔬Democritizing #Microscopy in LatAm #BiologistsWorkshops!

Facilities aren't just equipment hubs; they also hold the Institutional Memory.

You can find the slides with notes 👇: doi.org/10.5281/zeno...

And a summary below!🧵

17.10.2025 19:43 👍 1 🔁 0 💬 1 📌 0

Getting so many experts from across Latin America in one room was truly transformative. The conversations and connections made here are the foundation for a much stronger, collaborative future for #Bioimageing in our region.

17.10.2025 18:47 👍 0 🔁 0 💬 0 📌 0

Huge, heartfelt thanks to the @biologists.bsky.social for hosting the Democratizing Microscopy in Latin America workshop!
#BiologistsWorkshops

17.10.2025 18:47 👍 2 🔁 0 💬 1 📌 0
Group of people (all with big smiles!) testing out some low-cost microscopes.

Group of people (all with big smiles!) testing out some low-cost microscopes.

Last night we learnt about 'Microscopía Para Todos' from Licyel Paulas & 'Educaciencia' from Haydee Hernández Aviña, followed by a chance to play with their microscopes.
Read more about Educaciencia:

focalplane.biologists.com/2024/08/02/i...
#BiologistsWorkshops

15.10.2025 14:21 👍 7 🔁 2 💬 0 📌 0
People gathered in a wood and glass building with flowers and fruit in the foreground.

People gathered in a wood and glass building with flowers and fruit in the foreground.

People being served drinks in a sunny glass and wood building with lots of greenery in the background.

People being served drinks in a sunny glass and wood building with lots of greenery in the background.

Our attendees receive a special welcome in Baños, including our Workshop organiser, Licyel Lenny Paulas Condori. Licyel set up ‘Microscopia Para Todos’, a STEAM outreach programme in Bolivia.
Read more about Licyel & her project⤵️:
focalplane.biologists.com/2023/04/25/a...
#BiologistsWorkshops

12.10.2025 20:26 👍 7 🔁 3 💬 0 📌 0

Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS.

I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social

research.pasteur.fr/en/team/imag...
⬇️

13.10.2025 08:10 👍 39 🔁 14 💬 1 📌 1
People smiling at the camera while sitting at a long dinner table.

People smiling at the camera while sitting at a long dinner table.

Room set up for a meeting

Room set up for a meeting

The attendees are gathered, and the meeting room is ready.

The next organiser that we are highlighting is Fernanda Latorre Barragán. You can read about Fer’s career in this interview with @marianadeniz.bsky.social from 2023.
#BiologistsWorkshops
focalplane.biologists.com/2023/07/25/a...

12.10.2025 15:52 👍 5 🔁 3 💬 0 📌 1