Troubleshooting common errors in assemblies of long-read metagenomes www.nature.com/articles/s41... #jcampubs
02.01.2026 20:30
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Troubleshooting common errors in assemblies of long-read metagenomes www.nature.com/articles/s41... #jcampubs
That is bonkers! I love it!
Congrats to @quantaofgeorge.bsky.social for being awarded best postdoc talk NeLLi symposium for his phenomenal work on the first successful cultivation of Thiovulum. Mind blowing collective behaviors by the fastest organism per body length on the planet!
I'm "talking to my genome"....
This. Is. So. Cool. 🤯
Administrators at Indiana University baselessly fired the student media director and ordered the student paper to cease its print edition, so it'd sure be a shame if this excellent digital front page were to be widely shared today
issuu.com/idsnews/docs...
This was so valuable to me this summer as I was reading and grant writing! Thank you!!
I so wish I could have been there in person with you all instead - but so grateful for a chance to participate from a far rather than miss out on such a fantastic meeting!!
📣The #EMBOWorkshop hosted by @multicellgenome.bsky.social Lab has begun!
🔬Three days filled with talks from international experts exploring the #evolution and origins of #multicellularity🦠🧬
#Multicellverse #UnravellingEvolution #DiscoveringLife
Same!!
We’ve found the annotations from PGAP much more useful than polls, been meaning to try bakta but haven’t. PGAP is a huge pain to try running locally though.
Preprint out for myloasm, our new nanopore / HiFi metagenome assembler!
Nanopore's getting accurate, but
1. Can this lead to better metagenome assemblies?
2. How, algorithmically, to leverage them?
with co-author Max Marin @mgmarin.bsky.social, supervised by Heng Li @lh3lh3.bsky.social
1 / N
High-resolution metagenome assembly for modern long reads with myloasm www.biorxiv.org/content/10.1... #jcampubs
Contact‐dependent iron uptake from dust revealed by elemental analysis of single Trichodesmium colonies aslopubs.onlinelibrary.wiley.com/doi/10.1002/... #jcampubs
Ya that’s what I was thinking about. Lots of SRB have ability to put e- on oxygen, but no evidence they use for anything other than detox. all the cases I can think of off the top of my head are Cytbd
What about SRB? I guess cytbd isn’t quite the same as “full”….
And congrats @nicoledubilier.bsky.social !
Can’t wait to read about those pacbio assemblies with all the transposons. Tell your student I feel their pain! 🤣
My postdoc Emily Junkins giving talk on her exciting project looking at CRISPR evolution with strain level resolution in uncultivated consortia. So proud of her amazing work on this project!
Pink berries! Metabolomics! Metateanscriptomes! Oh my! ❤️
My #ASMicrobe fomo not so bad because I’m SO proud of the work my lab is presenting there :)) check out Biobraulio.bsky.social
EEB Poster 4244 for his sneak preview on his amazing thesis.
Ooooo that sounds rad! We’ve a new baby so I’ve been bowing out of everything and sending my students/postdocs, but this sounds *awesome* and very tempting :))
We just got this working on the pink berries. The data is SO RAD 🤯