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The idea started as a journal club run by @siobhane13.bsky.social in September 2023 and eventually morphed into a lab wide paper at @acadresearch.bsky.social.
It was a lot of fun working with the group and co-leading with Dr. Roberta Davidson. I would love to hear your thoughts.
๐งฌ ๐ New paper alert! ๐ ๐งฌ
We review recent literature that use ancient DNA methods in the analysis of archeological artefacts. We hope this will be a useful resource to improve the inclusion of ancient DNA methods into the study of ancient artefacts.
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www.sciencedirect.com/science/arti...
Terminal Genome Viewer (tgv), written in Rust github.com/zeqianli/tgv
Sedimentary ancient DNA from caves: Challenges and opportunities doi.org/10.1002/jqs.... , first publication from the PhD research of @siobhane13.bsky.social - congratulations!
Had a fantastic time meeting great people and learning about exciting aDNA research! Thanks @mattiassherman.bsky.social and team for organising a great event and giving me an opportunity to present my work.
Since your reads are so short, even a smaller Kmer db would struggle with classifying them. And smaller kmer db come with more false classifications as well.
Your approach is perfectly fine. You could use the classification to remove reads from taxa you are not interested in.
My opinion is that the database is more important than the classifier. If you are happy with the database, Iโd stick to that.
Thanks Mikkel!
Thanks @mp-williams.bsky.social! Glad you enjoyed it!
Very excited to share the first paper from my PhD thesis. It was a pleasure to work with such amazing people. Check out the thread and paper below. Keen to hear your thoughts.
๐ Abstract submissions open!
Are you an Indigenous researcher?
Join the conversation at the ๐ฐ๐๐ต ๐๐ป๐๐ฒ๐ฟ๐ป๐ฎ๐๐ถ๐ผ๐ป๐ฎ๐น ๐๐ป๐ฑ๐ถ๐ด๐ฒ๐ป๐ผ๐๐ ๐๐ฒ๐ฎ๐น๐๐ต & ๐ช๐ฒ๐น๐น๐ฏ๐ฒ๐ถ๐ป๐ด ๐๐ผ๐ป๐ณ๐ฒ๐ฟ๐ฒ๐ป๐ฐ๐ฒ ๐ฎ๐ฌ๐ฎ๐ฑ! Share your research and contribute to our collective knowledge.
Submit here โก๏ธ lnkd.in/eYs4VZSD โ๏ธ
