Trevor Krabbenhoft's Avatar

Trevor Krabbenhoft

@fishgenomes

Associate Professor of Biological Sciences. We study genomes (WGD, etc.), and the ecology and evolution of fishes.

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09.10.2023
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Latest posts by Trevor Krabbenhoft @fishgenomes

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Molecular Ecology Molecular Ecology is an international journal for research using molecular genetic techniques to address questions in ecology, evolution, behavior and conservation.

Hello! Molecular Ecology is now on @bsky.app!
Follow us for updates about Molecular Ecology and Molecular Ecology Resources publications, as well as special issues, events, and awards!
onlinelibrary.wiley.com/journal/1365...

04.03.2026 22:11 πŸ‘ 8 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
Student Research Award <p>The ASN Student Research Awards support research by student members that advances the goals of the society: the conceptual unification of ecology, evolution, and behavior. Each award consists of a ...

Just a few days left to submit the ASN student research award (due March 13th)!!!! This is an AWESOME opportunity for students to get some grant writing experience!!! We LOVE reading your grants and giving feedback!!!!!!!!!!! Apply, Apply, Apply!!!!!!

www.amnat.org/announcement...

03.03.2026 14:38 πŸ‘ 18 πŸ” 29 πŸ’¬ 0 πŸ“Œ 0
Structural Variants ESEB Special Topic Network Structural Variants ESEB Special Topic Network

Announcing the STRiVE network by ESEB to study structural genomic variation through research and seminars. Join us! Details: https://structuralvariantsstn.github.io. Newsletter: https://groupes.renater.fr/sympa/subscribe/stnstrive. #conference

23.02.2026 21:54 πŸ‘ 6 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Come join #LaurierBiology!
We're recruiting 3 tenure-track faculty positions!

Integrative Organismal Zoologist!
careers.wlu.ca/job/Waterloo...

Microbial Systems Biologist!
careers.wlu.ca/job/Waterloo...

Computational Ecology/Modeling Biologist!
careers.wlu.ca/job/Waterloo...

DEADLINE MARCH 22nd!

20.02.2026 22:57 πŸ‘ 15 πŸ” 29 πŸ’¬ 2 πŸ“Œ 0

New round of NSF GRFP declines without review. If you were affected:
1) Write NSF
2) Write your Congressperson
3) CC us at grfp@grant-witness.us so we can compile + follow up

Details and template at grant-witness.us/grfp-letter

This is the link to the post: bsky.app/profile/noam...

05.02.2026 15:27 πŸ‘ 33 πŸ” 35 πŸ’¬ 0 πŸ“Œ 3
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Evolution 2025 Registration Evolution 2025 - the joint conference of the SSE, ASN, and SSB

Registration is now open! Early-bird closes April 15. www.evolutionmeetings.org/registration...

16.02.2026 18:06 πŸ‘ 20 πŸ” 25 πŸ’¬ 1 πŸ“Œ 3

+1 for PopTools - that thing was awesome!

16.02.2026 22:20 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Really crazy that these massive genes are 6% of the 1.5 Mbp genome in this bee gut symbiont:

16.02.2026 14:23 πŸ‘ 14 πŸ” 6 πŸ’¬ 0 πŸ“Œ 0

Now on Bluesky - lead author Christopher Osborne! @congenomics.bsky.social

11.02.2026 17:35 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

In a conservation context, need for β€œgenetic rescue” is often evaluated solely at nucleotide level, but perhaps isn't necessary if SVs & pangenomic variation provide the needed β€œgenetic diversity” for ecol success. Among-pop homogenization risk should be given more attention re. "rescue" in my view.

10.02.2026 01:10 πŸ‘ 2 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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Slightly off topic, but informative re. inbreeding - we also identified the sex chromosomes in brown treesnake and demonstrate their evolutionary origins relative to other snakes, providing information on how sex chromosomes (can sometimes) degenerate over time.

10.02.2026 01:10 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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Despite the apparent lack of genetic diversity at the nucleotide level, structural genomic variants (indels, inversions) rescue the pop from inbreeding. Structural variants were often TE-associated and genes affected by SVs were enriched for olfaction – a key feature of their ecol success on Guam.

10.02.2026 01:10 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Graph depicting a decline in effective population size following the introduction of brown treesnake to Guam around the 1950s.

Graph depicting a decline in effective population size following the introduction of brown treesnake to Guam around the 1950s.

Graphs depicting extensive, and long, runs of homozygosity across the brown treesnake genome.

Graphs depicting extensive, and long, runs of homozygosity across the brown treesnake genome.

We assembled a haplotype-resolved genome and found evidence of extensive inbreeding, decline in effective pop size, and extended runs of homozygosity in nucleotide sequence across the genome, as expected based on their invasion history.

10.02.2026 01:10 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Brown treesnake photo and karyogram of a haplotype phased genome assembly.

Brown treesnake photo and karyogram of a haplotype phased genome assembly.

Biological invasions present an interesting paradox: often little genetic variation is accompanied by dramatic ecological success. Led by PhD student Chris Osborne, we evaluated genetic diversity in a classic invader, brown treesnake on Guam. www.biorxiv.org/content/10.6... Photo: Pavel Kirilliov

10.02.2026 01:10 πŸ‘ 14 πŸ” 7 πŸ’¬ 1 πŸ“Œ 0

We're excited to be recruiting an NIH funded postdoc to work in the Coop lab at UC Davis. We're specifically interested in candidates who are want to work at the intersection of human genetics, GWAS, and population genetics modeling. Please RT

15.10.2025 15:53 πŸ‘ 162 πŸ” 211 πŸ’¬ 1 πŸ“Œ 5
Uppsala in late autumn

Uppsala in late autumn

Join us at the Evolutionary Biology Centre at Uppsala University. We’re searching for an Assistant Professor in Biology. www.uu.se/en/about-uu/...

28.01.2026 20:28 πŸ‘ 158 πŸ” 186 πŸ’¬ 1 πŸ“Œ 5

I wrote today about AlphaGenome, Google DeepMind's AI for DNA. It's powerful, experts told me, but it won't solve the mysteries of the genome overnight. Gift link: nyti.ms/4k5NFIl

28.01.2026 16:44 πŸ‘ 43 πŸ” 14 πŸ’¬ 1 πŸ“Œ 0

I’ve never been prouder to be a Minnesotan.

27.01.2026 00:36 πŸ‘ 47212 πŸ” 4485 πŸ’¬ 1610 πŸ“Œ 287

Someone beat me to it. You should meet Alec if you haven't - a great champion of long lived and underappreciated fishes (suckers!)

22.01.2026 15:47 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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🚨 Job Alert! TT Assistant Professor of Marine Biology at the University of Alaska Fairbanks! Looking for a candidate with a focus on coastal ecology. Come be my colleague! Please share.

careers.alaska.edu/jobs/assista...

05.01.2026 19:35 πŸ‘ 59 πŸ” 68 πŸ’¬ 1 πŸ“Œ 1
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Two white-blooded fish, two paths: Icefish and noodlefish independently lose red blood cell function Antarctic icefish are famous for living without red blood cells, but they are not alone. A species of needle-shaped, warm-water fish called the Asian noodlefish also lacks hemoglobin and red blood cel...

phys.org/news/2026-01...

03.01.2026 19:31 πŸ‘ 15 πŸ” 12 πŸ’¬ 1 πŸ“Œ 0

#Nanopore sequencing for ancient DNA -->

29.12.2025 22:51 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

A really important fish collection!

27.12.2025 15:54 πŸ‘ 3 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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There are 8 million fish in a World War II bunker outside New Orleans. More arrive soon. Hidden in a World War II bunker near New Orleans, Tulane stores more than 8 million preserved fish β€” and the collection is still growing.

Great news article about the Tulane University Biodiversity Research Institute's Royal D. Suttkus Fish Collection and our recent accessions of specimens from the DEEPEND Consortium and the University of Louisiana at Monroe.

27.12.2025 15:05 πŸ‘ 74 πŸ” 25 πŸ’¬ 2 πŸ“Œ 1

Led by Anthony Barley and co. (not on Bsky?). Some interesting results here from a genomic perspective - (1) tree topology varies spatially across the chromosomes and (2) #chromosome length (macro vs micro) is correlated with magnitude of divergence and introgression level. Lizard genomes are cool!

27.12.2025 15:48 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Congrats to @pfschwarz.bsky.social on publishing her undergraduate honors thesis work on darter hybridization! There is evidence of ecological specialization of two sister species. She also compares lcWGS and RAD-seq data for the same samples and finds tighter distribution of Fst estimates w/ lcWGS

27.12.2025 00:08 πŸ‘ 12 πŸ” 4 πŸ’¬ 1 πŸ“Œ 0
Home - ProbGen 2026 Your Site Description

The registration deadline is fast approaching for probgen 2026! Abstracts due by January 15, registration by January 31

probgen2026.github.io

18.12.2025 17:09 πŸ‘ 16 πŸ” 18 πŸ’¬ 1 πŸ“Œ 0
https://evol.mcmaster.ca/brian/evoldir/PostDocs//UCalifornia_Berkeley.Genomics Postdoc:UCBerkeley.Genomics Postdoctoral position(s) in computational biology and genomics Keywords: Genomics; single cell genomics; evolution; reproduction; ecology; human disease; computational bi...

The Sudmant Lab & Wilsterman Lab are hiring a postdoc! Come work on the genetics and evolution of the placenta and dissecting genetic adaptations to altitude in deer mice!

Check out more details here: evol.mcmaster.ca/brian/evoldi...

www.sudmantlab.org
www.thewilstermanlab.com

Please Share!

09.12.2025 05:20 πŸ‘ 15 πŸ” 18 πŸ’¬ 1 πŸ“Œ 0

@ckrabb.bsky.social might know!

09.12.2025 15:31 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Interesting. In O. edulis if the repeat content differs between <=5 and >5 that would likely explain the difference in heatmap (eg some specific repeat abundant in first five but not second five). Interesting that this matches chromosome type (meta vs telo etc) - check if recomb rates differ?

04.12.2025 00:14 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0