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Mathieu Bourdenx

@mbourdenx

Neuroscientist at @UKDRI at UCL working on Ageing and Dementia. 🧠 Dad x2 Serial procrastinator

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08.11.2024
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Latest posts by Mathieu Bourdenx @mbourdenx

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Making "AI Scientists" has become a hot topic lately. The first reference I could find was from 2008. The term has been used for 20 years! Like "Adam," an AI Scientist robot for studying yeast was published in 2009. I wrote a short post about the term and what it means now.

diffuse.one/p/w1-001

29.10.2025 18:26 πŸ‘ 8 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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Meet our new Future Leader Fellows!πŸ‘

Introducing @mbourdenx.bsky.social, Dr Sophie Morse & Dr Wioleta Zelek who have been awarded prestigious Future Leader Fellowships from @ukri.org ⬇️

Read more about their workπŸ‘‰ buff.ly/JOH2d9N

26.09.2025 16:18 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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πŸ€– Could an AI scientist help unlock the secrets of dementia?
Dr @mbourdenx.bsky.social (@ukdri.ac.uk at UCL), is working with @futurehousesf.bsky.social to explore how AI is transforming research.
buff.ly/O8RjZIX
#UCLDementia #WorldAlzheimersMonth

25.09.2025 10:08 πŸ‘ 3 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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Huge congratulations to Dr @angelikaza.bsky.social and Dr @mbourdenx.bsky.social who have both been awarded @ukri.org Future Leaders Fellowships! πŸ™Œ @uclqsion.bsky.social @ukdri.ac.uk
Find out about their exciting projects: www.ucl.ac.uk/brain-scienc...

16.09.2025 14:43 πŸ‘ 6 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0

β€œUltimately, I see AI leading to an acceleration in discovery in dementia research that could be transformative for patients" says Dr @mbourdenx.bsky.social @ukdri.ac.uk, who is working with an "AI scientist", a system that can analyse data and suggest new research directions not yet explored

22.09.2025 16:10 πŸ‘ 2 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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Differential pathological dynamics triggered by distinct Parkinson patient–derived Ξ±-synuclein extracts in nonhuman primates Distinct Ξ±-synuclein assemblies trigger distinct neurotoxic cellular pathways.

I’m very happy πŸ₯³ to share our new collaborative work, out today in Science Advances! Many thanks to all the co-authors!

Differential pathological dynamics triggered by distinct Parkinson patient–derived Ξ±-synuclein extracts in nonhuman primates | Science Advances www.science.org/doi/10.1126/...

18.06.2025 18:36 πŸ‘ 2 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

It must be an April fool’s prank

01.04.2025 21:43 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Inside arXivβ€”the Most Transformative Platform in All of Science Modern science wouldn’t exist without the online research repository known as arXiv. Three decades in, its creator still can’t let it go.

"The biggest mystery is not why arXiv succeeded. Rather, it’s how it wasn’t killed by vested interests intent on protecting traditional academic publishing."

www.wired.com/story/inside...

28.03.2025 10:56 πŸ‘ 63 πŸ” 19 πŸ’¬ 3 πŸ“Œ 1

I like that there is a camera just next to the sign … big brother is watching you!

05.03.2025 13:49 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Inside the Collapse at the NIH Administration officials pressured the NIH to avoid clear advice from the agency’s own lawyers to restart grant funding now.

Flabbergasting

www.theatlantic.com/health/archi...

02.03.2025 12:09 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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RNA xkcd.com/3056

26.02.2025 14:58 πŸ‘ 17844 πŸ” 2559 πŸ’¬ 154 πŸ“Œ 171
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Sur les retraites, Bayrou a menti.

Le "dΓ©ficit cachΓ©" des retraites n’a jamais existΓ©.

Pour justifier son refus d'abroger la rΓ©forme des retraites, il avait inventΓ© un dΓ©ficit de 55 milliards en 2030.

La Cour des comptes dit que ce sera 5 fois moins. Maintenant : abrogation.

20.02.2025 12:27 πŸ‘ 732 πŸ” 341 πŸ’¬ 39 πŸ“Œ 8

The ground truth for AD is a bit of a debate recently, to say the least! But I am a big fan of the intersection between a clinical diagnosis and a biological definition.

19.02.2025 10:51 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

- we need to learn from system biology regarding the interpretation of gene hits. For too long we have relied on imprecise tools (gene ontology) that are often wrongly annotated and cannot sufficiently account for the redundancy of biological systems or the existence of feedback loops

19.02.2025 06:25 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Interesting read! Some thoughts: - a GWAS is only as good as the patient inclusion. There has been immense efforts for AD on that aspect, even doing small postmortem GWAS on path confirmed cases
- the absence of a coherent picture at the gene level might indicate multiple disease mechanisms

19.02.2025 06:25 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

🚨Cool Job Alert 🚨consider joining this amazing and rocknroll lab

12.02.2025 22:22 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Tesla paid $0 in federal income tax last year.

2022: $0
2021: $0
2020: $0
2019: $0
2018: $0

Tesla reported $6.7 billion in profit in those years.

08.02.2025 22:56 πŸ‘ 51037 πŸ” 18214 πŸ’¬ 1414 πŸ“Œ 871
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Splicing accuracy varies across human introns, tissues, age and disease - Nature Communications Inaccuracies in RNA splicing may play a significant role in aging and disease. Here, the authors present a comprehensive characterization of splicing accuracy across over 14,000 human samples, offerin...

New in @naturecomms.bsky.social: I'm thrilled to share with you our latest work that applies #srRNAseq to understand splicing accuracy across human introns, tissues and in the context of ageing and neurodegeneration www.nature.com/articles/s41...

27.01.2025 21:53 πŸ‘ 20 πŸ” 12 πŸ’¬ 6 πŸ“Œ 1

After spending 4 years in the USA for my postdoc and my daughter being born there, it always felt (and still feels like!) a second home. So it’s utterly sad to see what’s happening now. I stand with all my American friends! Resist ✊πŸ’ͺ

25.01.2025 18:48 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Avec son nouveau programme, LFI fait un pas de plus vers la prΓ©sidentielle EXCLUSIF. Le mouvement de Jean-Luc MΓ©lenchon a mis Γ  jour son programme, l’Avenir en commun, et se prΓ©pare plus que jamais Γ  une nouvelle Γ©l

Notre programme est prΓͺt.
Nous sommes au travail.

Plutôt que des aventures personnelles, nous faisons des propositions concrètes pour dessiner un horizon souhaitable.

www.leparisien.fr/elections/pr...

25.01.2025 10:23 πŸ‘ 785 πŸ” 197 πŸ’¬ 49 πŸ“Œ 7

That’s completely crazy ! And worrisome …

20.01.2025 21:02 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Still waiting to see most UK and French universities to do the same …

13.01.2025 22:22 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Our brains are very similar at 4am!

07.01.2025 23:00 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Overview of the LEMUR steps: (1) subspace alignment, (2) differential expression, (3) DE neighborhoods, (4) pseudobulking.

Overview of the LEMUR steps: (1) subspace alignment, (2) differential expression, (3) DE neighborhoods, (4) pseudobulking.

After 4y in the making, I am super excited that my main PhD project is published πŸŽ‰πŸ₯³πŸŽ‰πŸŽ‰πŸ₯³

www.nature.com/articles/s41...

LEMUR is a tool to analyze multi-condition single-cell data and model differential expression as a continuous function of the cell-state space.

Some highlights⬇️

03.01.2025 19:25 πŸ‘ 155 πŸ” 35 πŸ’¬ 8 πŸ“Œ 3

πŸ”₯ chatomics! I regret not learning this well in collegeβ€”and it changed how I approach bioinformatics today. Here’s my story and why you should avoid my mistake. 🧬

30.12.2024 14:15 πŸ‘ 1 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
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In vivo hyperphosphorylation of tau is associated with synaptic loss and behavioral abnormalities in the absence of tau seeds - Nature Neuroscience Mice expressing humanized mutant tau exhibit synaptic loss and behavioral abnormalities in the absence of abnormal tau conformers, suggesting that hyperphosphorylated tau can be pathological, at least...

Paper alert from the Duff Lab 🚨🚨 My amazing colleagues showed that, in novel MAPTKI models, hyperphosphorylation (in absence of aggregation or even seeding) is sufficient to drive synapse loss and cognitive deficits. Huge implications for preclinical research and the way to therapies. Have a read!!

26.12.2024 13:39 πŸ‘ 4 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Congratulations all! Looks great!

21.12.2024 12:26 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Mindblowing paper creating spatial aging clocks 🀯🀯 ! Very neat use of spatial tx. Congrats to @brunetlab.bsky.social and all the authors

19.12.2024 08:02 πŸ‘ 5 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

Thank you so much πŸ‘πŸ»πŸ™πŸ˜πŸ˜ and well noted about the neurostar forum

05.12.2024 16:15 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Unfortunately so common … but at least you got an answer!!

04.12.2024 08:17 πŸ‘ 1 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0