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James Diggans

@jdiggans

Bioinformatics and biosecurity

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11.09.2023
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Latest posts by James Diggans @jdiggans

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Oligo-length biosecurity vs. AI engineering

Bruce Whittmann, @erichorvitz.bsky.social, our @jdiggans.bsky.social & team examine the vulnerabilities of biosecurity screening software to AI-reformulated synthetic homologs of POCs that have been cut into smaller segments.

@twistbioscience.com

11.03.2026 13:28 πŸ‘ 1 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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On sabotage of our young scientists, by @holdenthorp.bsky.social @science.org
www.science.org/doi/10.1126/...

05.03.2026 19:20 πŸ‘ 192 πŸ” 73 πŸ’¬ 6 πŸ“Œ 1
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How to deter biothreats in the age of gene synthesis From global DNA screening standards to safeguards for benchtop synthesizers and AI tools, a new biosecurity playbook is taking shape.

From global DNA screening standards to safeguards for benchtop synthesizers & AI tools, a new biosecurity playbook is taking shape.

Experts like our head of biosecurity, @jdiggans.bsky.social are thinking about this playbook so you don’t have to: bigthink.com/science-tech...

04.03.2026 14:04 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

I do it regularly and feel guilty every single time.

24.02.2026 14:58 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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We ran a randomized controlled trial to see if LLMs can help novices perform molecular biology in a wet-lab.

The results: LLMs may help in some aspects, but we found no significant increase at the core tasks end-to-end. That's lower than what experts predicted.

Our findings 🧡

19.02.2026 17:37 πŸ‘ 17 πŸ” 5 πŸ’¬ 1 πŸ“Œ 3
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Why universal gene synthesis screening protects American biotech A recent bill, the Biosecurity Modernization and Innovation Act, outlines a vision for comprehensive gene synthesis screening standards.

Why universal gene synthesis screening protects American biotech

www.washingtonexaminer.com/restoring-am...

19.02.2026 15:01 πŸ‘ 1 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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LLMs are good at idea quality, but weak on idea variance. GPT-4's brainstorm pools are less diverse than humans, unless you prompt for diversity explicitly. CoT prompting gets closest to β€œteam human.” papers.ssrn.com/sol3/papers....

03.02.2026 19:01 πŸ‘ 8 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0
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U.S. government has lost more than 10,000 STEM Ph.D.s since Trump took office A Science analysis reveals how many were fired, retired, or quit across 14 agencies

"Some 10,109 doctoral-trained experts in science and related fields left their jobs last year as President Donald Trump dramatically shrank the overall federal workforce."
www.science.org/content/arti...

29.01.2026 20:10 πŸ‘ 15 πŸ” 8 πŸ’¬ 1 πŸ“Œ 0
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Google’s AlphaGenome wants to do for DNA what AlphaFold did for proteins Model predicts effect of mutations on sequences up to 1 million base pairs in length and is adept at tackling complex non-coding regions

Google’s AlphaGenome deep learning model wants to do for DNA what AlphaFold did for proteins www.chemistryworld.com/news/googles...
#biology #AI #bio #biotech

28.01.2026 16:41 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

This 🧡- any β€˜article of the future’ proposals must consider this first.

Discussions about new features/formats for human readers make little sense until we address this.

28.01.2026 14:02 πŸ‘ 7 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Amazon is buying copper harvested by bacteria for its data centers Bacteria-powered copper mining

Amazon is buying copper harvested by bacteria for its data centers

15.01.2026 18:20 πŸ‘ 24 πŸ” 6 πŸ’¬ 3 πŸ“Œ 0
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Highlights from PBS News Weekend as show goes off the air This Sunday is the final broadcast of PBS News Weekend, at least for the foreseeable future. PBS cancelled the show due to the loss of federal funding for public media. As our team signs off the air, anchor John Yang looks back at some of our top storie...

Tonight marked the last broadcast of PBS News Weekend for the foreseeable future. As the show signs off the air, anchor John Yang looks back at some of our top stories and highlights over the years. https://to.pbs.org/4pxYe7W

12.01.2026 03:02 πŸ‘ 1172 πŸ” 418 πŸ’¬ 70 πŸ“Œ 45
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This afternoon, retired Army general Stanley McChrystal spoke at the retirement ceremony hosted by HRC for six trans service members who were forced out under Trump’s ban.

β€œI shouldn’t have to be thanked for being here. First off, we shouldn’t be here. This shouldn’t be happening.”

Full remarks:

08.01.2026 23:39 πŸ‘ 3532 πŸ” 906 πŸ’¬ 25 πŸ“Œ 68

Merriam-Webster’s human editors have chosen β€˜slop’ as the 2025 Word of the Year.

15.12.2025 14:07 πŸ‘ 24049 πŸ” 7281 πŸ’¬ 360 πŸ“Œ 940
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🀩 πŸŽ‰ We’re thrilled to see our collaboration highlighting the importance of iterative improvement, cross industry collaboration, and foresight in biosecurity screening in the age of AI with @microsoft.com in this list: news.microsoft.com/source/featu...

@twistbioscience.com, @jdiggans.bsky.social

12.12.2025 12:32 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Report Launch: Safeguarding AIxBio Capabilities to Prevent Global Catastrophe
Report Launch: Safeguarding AIxBio Capabilities to Prevent Global Catastrophe YouTube video by Nuclear Threat Initiative

@nti.org convened global experts at the 2025 MSC for a scenario involving an AI-designed virus to examine risks, opportunities, and needed governance.

Hear insights from Brian Tse, @jdiggans.bsky.social, @bethcameron-dc.bsky.social, @jaimeyassif.bsky.social & Haley Severance.

08.12.2025 15:21 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Report Launch: Safeguarding AIxBio Capabilities to Prevent Global Catastrophe "Safeguarding Against Global Catastrophe: Risks, Opportunities, and Governance Options at the Intersection of Artificial Intelligence and Biology," highlights actions the international community can t...

@nti.org is launching its new AIxBio governance report emerging from a 2025 MSC tabletop exercise with high-level international experts.

Hear insights from Brian Tse, @jdiggans.bsky.social, @bethcameron-dc.bsky.social, @jaimeyassif.bsky.social , & Haley Severance.

πŸ”— Register Now ⬇️

24.11.2025 17:02 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Tedros Adhanom Ghebreyesus on X: "#Ethiopia has confirmed the outbreak that has infected at least 9 people in the south of the country is of #Marburg virus disease. I commend Ethiopia’s @FMoHealth for its rapid and transparent response to the outbreak, and the work of the Ethiopia Public Health Institute and" / X #Ethiopia has confirmed the outbreak that has infected at least 9 people in the south of the country is of #Marburg virus disease. I commend Ethiopia’s @FMoHealth for its rapid and transparent response to the outbreak, and the work of the Ethiopia Public Health Institute and

The outbreak in Ethiopia is #Marburg virus, the first such outbreak for this country. 9 cases so far, including some health workers. x.com/drtedros/sta...

14.11.2025 16:22 πŸ‘ 106 πŸ” 53 πŸ’¬ 1 πŸ“Œ 5
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Microsoft has a fabulous behind-the-science blog paraphrasing the Paraphrase Project. πŸ˜‰

@erichorvitz.bsky.social, Bruce Wittmann, Tessa Alexanian, and our own @jdiggans.bsky.social are thinking about the latest threats to biosecurity so you don’t have to...

10.11.2025 15:48 πŸ‘ 2 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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Ebola virus in Kasai revives 50-year-old questions on viral latency On Sept 4, 2025, DR Congo declared its 16th Ebola virus outbreak. The epicentre of this outbreak occurred in the Kasai provinceβ€”the first resurgence in this region since 2008.1 Genomic analysis identi...

The 2025 Ebola outbreak in Kasai, DRC, is caused by a virus virtually identical (>99.5%) to the one from Yambuku in 1976.
Half a century later, the genome hasn’t changed. That’s not supposed to happen with an RNA virus.
www.thelancet.com/journals/lan...

17.10.2025 20:20 πŸ‘ 92 πŸ” 29 πŸ’¬ 3 πŸ“Œ 1

$40 billion dollars is the size of the entire NIH budget.

16.10.2025 20:10 πŸ‘ 443 πŸ” 192 πŸ’¬ 8 πŸ“Œ 2
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Ideas: More AI-resilient biosecurity with the Paraphrase Project - Microsoft Research In β€œIdeas,” collaborators Eric Horvitz, Bruce Wittmann, Tessa Alexanian, & James Diggans discuss a red-teaming effort that exposed & secured a biosecurity vulnerability in AI-driven protein designβ€”& w...

Collaborators @erichorvitz.bsky.social, Bruce Wittmann, Tessa Alexanian & @jdiggans.bsky.social discuss the paper in this engaging podcast.

Watch it here: www.microsoft.com/en-us/resear...

Read the paper here: www.science.org/doi/10.1126/...

@twistbioscience.com, @msftresearch.bsky.social

16.10.2025 19:02 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Asymmetries in Biosecurity RAND Report: Why biology still favors the offense in biosecurity

New blog post: Asymmetries in Biosecurity doi.org/10.59350/c5e...

16.10.2025 09:34 πŸ‘ 3 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
The Paraphrase Project Strengthening nucleic acid biosecurity screening against generative protein design tools β€” improving hazard detection in the age of AI-assisted protein engineering.

How do we decide what not to share?
I explore β€œinformation hazards” in this blog--on when openness in science risks misuse. Paraphrase effort led to a first-of-its-kind publishing model, accepted by Science: "When AI Meets Biology" aka.ms/AAy56z3 Full paper on the project avail here: aka.ms/AAy5e9c

06.10.2025 19:37 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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In β€œIdeas,” collaborators Eric Horvitz, Bruce Wittmann, Tessa Alexanian, & James Diggans discuss a red-teaming effort that exposed & secured a biosecurity vulnerability in AI-driven protein designβ€”& what the work shows about managing AI’s dual-use risks. msft.it/6010sLYsr

07.10.2025 16:03 πŸ‘ 6 πŸ” 2 πŸ’¬ 0 πŸ“Œ 2
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China Road Trip Exposes List of Uninvestable Assets in the West Venture capitalists in clean tech are starting to say out loud what they’ve suspected for a while: China’s dominance has left key sectors in the West uninvestable.

Venture capitalists in clean tech are starting to say out loud what they’ve suspected for a while: China’s dominance has left key sectors in the West uninvestable

25.09.2025 00:30 πŸ‘ 50 πŸ” 30 πŸ’¬ 2 πŸ“Œ 4

Today makes a very good day to listen to people who actually practice public health, pediatrics, and those with expertise in infectious diseases, developmental pediatrics, and/or epidemiology.

22.09.2025 22:15 πŸ‘ 376 πŸ” 98 πŸ’¬ 9 πŸ“Œ 4
WIRED's The Politics Issue

WIRED's The Politics Issue

Big Tech's embrace of President Trump has left many of us wondering: What the hell happened to Silicon Valley?

In our new politics issue, we're getting into it.

Also, we're taking this cover across the US in billboards, posters and a mural. Clues to find us in the 🧡: www.wired.com/politics-iss...

22.09.2025 13:23 πŸ‘ 2090 πŸ” 667 πŸ’¬ 118 πŸ“Œ 97
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Serious scholars have examined what happens when we change the number of H1-B visas issued.

Cities that get more H1-B immigrants subsequently see the wages of natives *rise* substantially.

Skilled immigrants bring new ideas, fill labor shortages and make us all more productive.

22.09.2025 14:42 πŸ‘ 1570 πŸ” 542 πŸ’¬ 36 πŸ“Œ 23