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Michael Raissig

@michaelraissig

Plant developmental geneticist, football fanatic, parent Associate Prof @unibern equity, fairness, transparency, posts my own, he/him

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22.09.2023
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Latest posts by Michael Raissig @michaelraissig

Congratulations Dr. @lbmountain.bsky.social! The past 6 years with you in the lab were a joy! Starting as a rotation student, MSc student and PhD student, moving with us from Heidelberg to Bern, sharing so many memories. You will be missed is the understatement of the year. Thank you for everything!

04.03.2026 15:41 πŸ‘ 10 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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Congratulations Dr. @lbmountain.bsky.social I could not be prouder of your achievements and the scientist you have grown into.

Your output, your calm demeanour, your focus, your enthusiasm and your community-oriented mindset make you a fantastic scientist, team member, person and role model.

04.03.2026 15:19 πŸ‘ 15 πŸ” 2 πŸ’¬ 1 πŸ“Œ 1
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πŸ”¬ MSc/PhD/postdoc position available - An exciting and innovative research opportunity! 🌱

Our lab at the Institute of Plant Sciences, Volcani Institute (ARO), is seeking an outstanding MSc, PhD, or Postdoc to join a cutting-edge research project on plant development and environmental responses.

12.02.2026 07:45 πŸ‘ 4 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Very proud of our stellar postdoc @charlotte-dlslle.bsky.social to have secured a MSCA postdoc fellowship! Very happy to have you an extra two years in the lab and accompany you on your journey to become a scientific leader and role model!

11.02.2026 12:41 πŸ‘ 15 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
Participants of the Rigi Workshop 2026

Participants of the Rigi Workshop 2026

πŸŒ„ The #RigiWorkshop 2026 is in full swing - once again bringing together early-career #researchers! πŸ§ͺ A big thank you to the organisers @caroreymond.bsky.social, @dudinlab.bsky.social & @michaelraissig.bsky.social πŸ™

26.01.2026 14:28 πŸ‘ 5 πŸ” 2 πŸ’¬ 1 πŸ“Œ 1
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What a fun meeting! The future of Swiss science is bright ⭐️

Thanks @dudinlab.bsky.social @michaelraissig.bsky.social for the invite!

Wonderful to see old friends @annikaguse.bsky.social @lsaunders.bsky.social @jandevries.bsky.social and new

27.01.2026 00:06 πŸ‘ 17 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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Today is the last day of the Rigi Workshop 2026 organised by @dudinlab.bsky.social @michaelraissig.bsky.social and @scnat.ch.Thanks to the participants and the fantastic speakers: Gautam Dey, Edwige Moyroud, Annika Guse, Susana Coelho, Lauren Saunders and Jan deVries. #SwissSocietyofPlantBiology

27.01.2026 10:45 πŸ‘ 8 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
Four Images: A scientist in a lab looking at a pipetting robot, a greenhouse with lots of pots containing plants, a scientist with drones and other euipment in a field, and a tractor driver with lots of high-tech equipment in the cockpit.
The text is: TalentCampus@KWS
May 29, 2026
A look behind the scenes:
All KWS research and
development departments
open their doors

Four Images: A scientist in a lab looking at a pipetting robot, a greenhouse with lots of pots containing plants, a scientist with drones and other euipment in a field, and a tractor driver with lots of high-tech equipment in the cockpit. The text is: TalentCampus@KWS May 29, 2026 A look behind the scenes: All KWS research and development departments open their doors

The headline and text says:
May 29, 2026 in Einbeck, 11 a.m. - 5 p.m.
Seeding the future – breeding
combines sciences and talents
The image is a wheel showing all the R&D contributions to plant breeding, incl. Molecular Biology Experimental Fields
Cell Biology
Breeding
Phytopathology
Chemical Analytics
Greenhouse
Phenotyping
Digitalization

The headline and text says: May 29, 2026 in Einbeck, 11 a.m. - 5 p.m. Seeding the future – breeding combines sciences and talents The image is a wheel showing all the R&D contributions to plant breeding, incl. Molecular Biology Experimental Fields Cell Biology Breeding Phytopathology Chemical Analytics Greenhouse Phenotyping Digitalization

Highlights of the program
Information stands
Breeders of our main crops explain their work
From sowing to harvesting: all the special machines of a breeding station
Digital tools for field trialing
Root phenotyping: how roots grow in the soil
Phenotyping with drones: multispectral from a bird's eye view
Phytopathology: insects, fungi, nematodes and other pathogens
Chemical Analytics and process analysis
Catch crops - concepts for agriculture, soil health, CO2 balance
Biological seed treatment
Breeding technologies – data and genomics specialists support breeding
Genome Editing: new breeding technologies and their application at KWS
Regulatory Affairs: paving the way to approval
From lab to market: how KWS protects intellectual property
Marker lab: examine the DNA
The art of engineering for seed production
Career opportunities at KWS
Hands-on activities
The start of a new generation of varieties: crossing plants by hand
Tissue culture: placing plant parts on a special diet in vitro
Leaf harvest for the marker lab
Live view of root growth: navigate a camera through the soil

Highlights of the program Information stands Breeders of our main crops explain their work From sowing to harvesting: all the special machines of a breeding station Digital tools for field trialing Root phenotyping: how roots grow in the soil Phenotyping with drones: multispectral from a bird's eye view Phytopathology: insects, fungi, nematodes and other pathogens Chemical Analytics and process analysis Catch crops - concepts for agriculture, soil health, CO2 balance Biological seed treatment Breeding technologies – data and genomics specialists support breeding Genome Editing: new breeding technologies and their application at KWS Regulatory Affairs: paving the way to approval From lab to market: how KWS protects intellectual property Marker lab: examine the DNA The art of engineering for seed production Career opportunities at KWS Hands-on activities The start of a new generation of varieties: crossing plants by hand Tissue culture: placing plant parts on a special diet in vitro Leaf harvest for the marker lab Live view of root growth: navigate a camera through the soil

If you're interested in #PlantScience R&D work at a plant breeding company: @kwsgroup.bsky.social is hosting its annual R&D TalentCampus here in Einbeck on May 29th.

More info here:
www.kws.com/corp/en/care...

13.01.2026 09:35 πŸ‘ 30 πŸ” 31 πŸ’¬ 0 πŸ“Œ 0

10 more days to apply - wonderful place and wonderful people (even though I might be slightly biased...)

13.01.2026 12:51 πŸ‘ 4 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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Save the date: Plant Development PhD school (i.e. Retzbach 2.0) in Neustadt, Germany.

Sept 23rd-25th, 2026
~€350 all inclusive

Excellent speakers and a relaxed atmosphere for early-career researchers (PhDs & postdocs). Registration opens soon.

For more info, see
raissiglab.org/plantdevosch...

13.01.2026 12:50 πŸ‘ 31 πŸ” 40 πŸ’¬ 2 πŸ“Œ 1
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Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development - Nature Plants Spatially resolved gene expression during barley development was done by integrating an scRNA-seq dataset from cells with unknown position with spatial transcriptomics. This dataset is publicly availa...

paper is out now in Nature Plants, here is a link: Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development. Nat. Plants (2026). doi.org/10.1038/s414...

08.01.2026 00:49 πŸ‘ 60 πŸ” 33 πŸ’¬ 0 πŸ“Œ 1
2026 Salt and Water Stress in Plants Conference GRC The 2026 Gordon Research Conference on Salt and Water Stress in Plants will be held in Les Diablerets, Vaud (fr) Switzerland. Apply today to reserve your spot.

Interested in learning about the latest and greatest research in how plants respond to excess salt, too little or too much water? Come to the GRC in Salt and Water Stress in Switzerland. Lots of opportunities for all career levels. www.grc.org/salt-and-wat.... Please repost!

06.11.2025 01:06 πŸ‘ 45 πŸ” 33 πŸ’¬ 1 πŸ“Œ 2

Look at this remarkable preprint by @lbmountain.bsky.social, presenting a single-cell RNA-seq atlas of the developing Brachypodium distachyon leaf.
What a joy it was to watch Lea progress during the analysis and to continuously find more and more exciting facts about the developing leaf 🌾

05.11.2025 15:00 πŸ‘ 5 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0

Thanks so much for the shoutout Dominique! Indeed, a good day for American democracy and thus democracy worldwide

05.11.2025 14:42 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

πŸ™ Anybody knows from where I can download a raster map with the different ecoregion of Europe?

05.11.2025 12:36 πŸ‘ 0 πŸ” 1 πŸ’¬ 0 πŸ“Œ 1

A wonderful collaboration with our colleagues from DΓΌsseldorf within the @cerealcell.bsky.social consortium. @isaiavardanega.bsky.social @simonrdg.bsky.social Jan Maika.
Thanks to the sequencing facilities at Uni Heidelberg and Uni Bern, and past and present team members for this "tour de force"

05.11.2025 12:32 πŸ‘ 5 πŸ” 2 πŸ’¬ 1 πŸ“Œ 0
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7/ Finallyβ€”our community tool 🌾
shiny.ips.unibe.ch
The B. distachyon Leaf Gene Expression Viewer allows visualization of any gene across the whole leaf, epidermal, or stomatal subsets.
Interactive UMAPs and ggPlantmap provide an eFP-browser-like experience for grass developmental biology.

05.11.2025 12:32 πŸ‘ 5 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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6/ As a proof of concept we functionally analyzed two novel marker genes, one that is expressed in dividing leaf cells and another one that is expressed in the developing stomatal lineages.

05.11.2025 12:32 πŸ‘ 4 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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5/ Gene regulatory network analysis of the stomatal clusters identifies top transcription factors per clusters and could distinguish the targetome of co-expressed yet functionally distinct stomatal transcription factors BdMUTE and BdFAMA

05.11.2025 12:32 πŸ‘ 4 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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4/ Pseudotime analysis reconstructs the guard cell lineage trajectory, mapping the sequential activation of key transcription factors and identifying novel stage-specific marker genes. Again, RNA-FISH validates sequential activity of the novel markers along developmental stages.

05.11.2025 12:32 πŸ‘ 4 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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3/ 
Focusing on the epidermis, we resolved most cell lineages of the grass leaf epidermis including stomatal guard cells and subsidiary cells, hair cells and silica cells. We used known and novel marker genes and multiplexed, RNA-FISH to confirm the in silico clusters in the actual leaf epidermis

05.11.2025 12:32 πŸ‘ 4 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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2/ Our Brachypodium leaf atlas spans all major tissues.
UMAPs resolve epidermal, mesophyll, vascular, and meristematic compartments.
Known markers define cluster identitiesβ€”revealing a coherent developmental continuum across the vegetative leaf.

05.11.2025 12:32 πŸ‘ 3 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
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1/ Preprint alert:

🌾 The developing leaf of the wild grass Brachypodium distachyon at single-cell resolution

πŸ‘‰ doi.org/10.1101/2025...
A 70k-cell single-cell RNA-seq atlas of the developing grass leafβ€”from the shoot meristem to mature leaf tissues. @cerealcell.bsky.social @lbmountain.bsky.social

05.11.2025 12:32 πŸ‘ 49 πŸ” 31 πŸ’¬ 3 πŸ“Œ 3

Check out this advertised professorship in Bern with my colleagues at the Institute of Plant Sciences! Please share widely to reach candidates from across the world and beyond our local academic bubbles. 🫧

#QueerInSTEM #DisabledInSTEM #BlackInSTEM #WomenInSTEM #CarersInSTEM #AcademicSky #HigherED

05.11.2025 10:18 πŸ‘ 11 πŸ” 12 πŸ’¬ 0 πŸ“Œ 1

Last but not least, I want to thank Sharon Kessler and @stanfordstomata.bsky.social . Your continuous support throughout my career, your encouragement to keep going even if my career path was far from straightforward, means a lot!

31.10.2025 12:40 πŸ‘ 4 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

@priyaramakrishna.bsky.social,Sara Simonini,Edwige Moyroud,@anneroulin.bsky.social,AurΓ©lia Emonet,Charlotte Delesalle,@pejullien.bsky.social,@matthiaserb.bsky.social, @rodrigoreislab.com,RubΓ©n Manzenado Delgado,@joopvermeer.bsky.social,Sergio Acebron, @lmueller.bsky.social,Pep Vilarrasa-Blasi

31.10.2025 12:40 πŸ‘ 4 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

I want to thank Uta Paszkowski @paszkowskilab.bsky.social, whom I met during the Brachy conference in summer, and who boosted my self-esteem tremendously. Having successful mothers in science role models means the world to me.

31.10.2025 12:40 πŸ‘ 3 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

Thank you to our PhD student Ari (not on Bluesky, why??). Without Ari’s help, this proposal would not have been possible. I am beyond excited to continue our path together and teach and learn new things all at the same time.

31.10.2025 12:40 πŸ‘ 3 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

🌡 So proud of my fav scientist in the world 🌡
Thrilled to see what will come of this super innovative project dissecting how leaf succulence is built and how it affects CAM photosynthesis!
Congrats @heikelindner.bsky.social and the KalanchoΓ« team!

31.10.2025 14:11 πŸ‘ 21 πŸ” 5 πŸ’¬ 0 πŸ“Œ 0
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🌿🌱 We’re hiring a tenure-track Assistant Professor (potentially open rank) at the Institute of Plant Sciences
@unibe.ch in Plant Population Ecology 🌻🌳

Be our colleague and join us in beautiful Bern, Switzerland

Apply by Jan 23 2026 πŸ‘‰ ohws.prospective.ch/public/v1/jo...

30.10.2025 15:55 πŸ‘ 79 πŸ” 85 πŸ’¬ 1 πŸ“Œ 4