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David Stansby

@dstansby

Research Software Engineer in bioimaging // I run the Human Organ Atlas (@humanorganatlas.bsky.social) // cyclist // walker

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12.11.2024
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Latest posts by David Stansby @dstansby

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NEW ANALYSIS: UK emissions fell 2.4% in 2025 as coal fell to a 400-year low. Incredibly, we used less coal last year than than in 1600, when Queen Elizabeth I was on the throne and Shakespeare was writing Hamlet.

All the details in our article: www.carbonbrief.org/...

05.03.2026 18:05 ๐Ÿ‘ 909 ๐Ÿ” 394 ๐Ÿ’ฌ 23 ๐Ÿ“Œ 29

Not the key point, but all the 'Andrew Mountbatten Windsor' coverage shows how quickly and easily the entire UK media complex can switch to someone's new name/title, even after using their old one for decades, when it's an incredibly pampered white male deviant. So, you know, it's not *that* hard...

20.02.2026 10:05 ๐Ÿ‘ 563 ๐Ÿ” 186 ๐Ÿ’ฌ 11 ๐Ÿ“Œ 3

Huge cuts to PPAN postdocs, but we can afford an adventure playground.

16.02.2026 11:48 ๐Ÿ‘ 13 ๐Ÿ” 6 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 1

Christ, this is fucking dystopian.

How about free art classes, language courses, music lessons, sport sessions, further education modules or anything other than this.

This is the antithesis of education itโ€™s a campaign of national brain rot.

28.01.2026 08:22 ๐Ÿ‘ 343 ๐Ÿ” 194 ๐Ÿ’ฌ 4 ๐Ÿ“Œ 3
Dear Sir Paul,

Re: Royal Society Code of Conduct

I am sure that many scientists have written to you about the specific question of Elon Muskโ€™s Fellowship and whether, under the Royal Societyโ€™s Code of Conduct, his retaining that Fellowship is appropriate. I will not rehash these issues.  Instead, as a female scientist with extensive experience of activities aiming to increase equality, diversity and inclusion in the engineering and physical sciences sector, I am writing to you (in a personal capacity) to ask you to reconsider the statements you have recently made in this context to the UK press about the Royal Societyโ€™s Code of Conduct and how it is applied.  

A 2018 report  from the joint National Academies of the United States of America, concluded that โ€œsexual harassment is common in academic science, engineering, and medicineโ€ and that โ€œgreater than 50 percent of women faculty and staff and 20โ€“50 percent of women students encounter or experience sexually harassing conduct in academiaโ€.  This report described codes of conduct that make clear that sexual harassment is unethical and will not be tolerated as a โ€œpowerful incentive for changeโ€. The authors also noted that sexual harassment can have significant and damaging effects on the integrity of research.  In my own praxis, I have found that clear and consistently-implemented codes of conduct that address these issues make female scientists and engineers safer, and allow them to focus more effectively on their research.  For codes of conduct to have such a positive effect, it is vital that sanctions for actions which transgress the code are meaningful and substantial.

Dear Sir Paul, Re: Royal Society Code of Conduct I am sure that many scientists have written to you about the specific question of Elon Muskโ€™s Fellowship and whether, under the Royal Societyโ€™s Code of Conduct, his retaining that Fellowship is appropriate. I will not rehash these issues. Instead, as a female scientist with extensive experience of activities aiming to increase equality, diversity and inclusion in the engineering and physical sciences sector, I am writing to you (in a personal capacity) to ask you to reconsider the statements you have recently made in this context to the UK press about the Royal Societyโ€™s Code of Conduct and how it is applied. A 2018 report from the joint National Academies of the United States of America, concluded that โ€œsexual harassment is common in academic science, engineering, and medicineโ€ and that โ€œgreater than 50 percent of women faculty and staff and 20โ€“50 percent of women students encounter or experience sexually harassing conduct in academiaโ€. This report described codes of conduct that make clear that sexual harassment is unethical and will not be tolerated as a โ€œpowerful incentive for changeโ€. The authors also noted that sexual harassment can have significant and damaging effects on the integrity of research. In my own praxis, I have found that clear and consistently-implemented codes of conduct that address these issues make female scientists and engineers safer, and allow them to focus more effectively on their research. For codes of conduct to have such a positive effect, it is vital that sanctions for actions which transgress the code are meaningful and substantial.

I was hence aghast to realise that in an interview with the Financial Times  published on 9/1/26, you appear to have suggested that the Royal Society โ€œshould only expel fellows if their science proved โ€œfaulty or fraudulent or highly defectiveโ€โ€.  Moreover, in a further interview with the Guardian  on 11/1/26 you suggested that the code โ€œmay need to be looked at againโ€, with the implication that your aim would be to remove the option of sanctions on Fellows for reasons not strictly related to faults or defects in their research. 

I suggest that changing the Royal Societyโ€™s code of conduct so that the likelihood of serious sanctions for sexual harassment is reduced, would directly endanger women who interact with the Royal Society at events or otherwise, and would provide a licence to harass to the already powerful people on whom the Society bestows fellowship.  The implications of your words - that under your leadership the only infringements of the code which are likely to receive the sanction of the Fellowship being removed are those related to research misconduct - already risk empowering harassers.  You stated, in the Financial Times interview, that โ€œthereโ€™s many bad people around, but they have made scientific advancesโ€.  Given this awareness of the possibility of bad actors in our scientific community, it is wholly irresponsible to suggest that the Royal Society would not act to sanction these people if they harass more vulnerable scientists.

I am hence writing to request that you retract any suggestion that the Societyโ€™s Code of Conduct should be changed so that the only reason a Fellow might be sanctioned by the removal of their Fellowship is โ€œfaulty or fraudulent or highly defectiveโ€ research.  This action is necessary to safeguard female scientists, a requirement placed on the Society by safeguarding legislation and UK statutory guidance. 

Yours sincerely,

Professor Rachel A. Oliver.

I was hence aghast to realise that in an interview with the Financial Times published on 9/1/26, you appear to have suggested that the Royal Society โ€œshould only expel fellows if their science proved โ€œfaulty or fraudulent or highly defectiveโ€โ€. Moreover, in a further interview with the Guardian on 11/1/26 you suggested that the code โ€œmay need to be looked at againโ€, with the implication that your aim would be to remove the option of sanctions on Fellows for reasons not strictly related to faults or defects in their research. I suggest that changing the Royal Societyโ€™s code of conduct so that the likelihood of serious sanctions for sexual harassment is reduced, would directly endanger women who interact with the Royal Society at events or otherwise, and would provide a licence to harass to the already powerful people on whom the Society bestows fellowship. The implications of your words - that under your leadership the only infringements of the code which are likely to receive the sanction of the Fellowship being removed are those related to research misconduct - already risk empowering harassers. You stated, in the Financial Times interview, that โ€œthereโ€™s many bad people around, but they have made scientific advancesโ€. Given this awareness of the possibility of bad actors in our scientific community, it is wholly irresponsible to suggest that the Royal Society would not act to sanction these people if they harass more vulnerable scientists. I am hence writing to request that you retract any suggestion that the Societyโ€™s Code of Conduct should be changed so that the only reason a Fellow might be sanctioned by the removal of their Fellowship is โ€œfaulty or fraudulent or highly defectiveโ€ research. This action is necessary to safeguard female scientists, a requirement placed on the Society by safeguarding legislation and UK statutory guidance. Yours sincerely, Professor Rachel A. Oliver.

Following coverage over the weekend of Sir Paul Nurse's comments that suggested that the only reason that a Fellow should be expelled from @royalsociety.org is scientific misconduct, I have written to him to explain the risks such an attitude poses of increasing sexual harassment in STEM.

12.01.2026 08:59 ๐Ÿ‘ 812 ๐Ÿ” 297 ๐Ÿ’ฌ 25 ๐Ÿ“Œ 29

So many reasons I could not cut it in politics, but one is I would just laugh inappropriately too much. Imagine, youโ€™re at a meeting of senior leaders and the CEO comes out with this crap.

06.01.2026 14:26 ๐Ÿ‘ 451 ๐Ÿ” 58 ๐Ÿ’ฌ 36 ๐Ÿ“Œ 6

[disclaimer, I'm a JOSS editor]

06.01.2026 10:30 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

Software that has a life beyond a single dump of the code at the end of a project is definitely more valuable to wider research, so although opinionated it doesn't seem to me an unreasonable criteria.

06.01.2026 10:30 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

If there's then > 6 months of further development, maintenance, and support after the initial release then software would become eligible.

06.01.2026 10:30 ๐Ÿ‘ 3 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
Preparing JOSS for a generative AI future: From code to human creativity and design | Journal of Open Source Software Blog Blog for the Journal of Open Source Software โ€ข <a href='https://joss.theoj.org'>https://joss.theoj.org</a>

We've shipped a major update to the JOSS submission scope requirements, affecting what is eligible for submission and what information we require from authors.

You can read more about the changes and our motivations here: blog.joss.theoj.org/2026/01/prep... #joss #opensource #openscience

05.01.2026 12:31 ๐Ÿ‘ 18 ๐Ÿ” 14 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 3

"international law must be followed" is european for "thoughts and prayers"

03.01.2026 14:08 ๐Ÿ‘ 13827 ๐Ÿ” 4213 ๐Ÿ’ฌ 64 ๐Ÿ“Œ 68

Spray paint a plane and they'll detain you without trial and call you a terrorist.

Kidnap a foreign head of state - and Keir Starmer will make it clear we've played no part in it but will wait for the scheduled press conference in a few hours before potentially condemning it

03.01.2026 13:50 ๐Ÿ‘ 5353 ๐Ÿ” 1663 ๐Ÿ’ฌ 202 ๐Ÿ“Œ 86
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Goodbye, Monkey Cage - not as infinite as I imagined

25.12.2025 11:55 ๐Ÿ‘ 984 ๐Ÿ” 101 ๐Ÿ’ฌ 97 ๐Ÿ“Œ 16
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a man in a pirate costume is talking to another man on a beach and says `` spooky '' . ALT: a man in a pirate costume is talking to another man on a beach and says `` spooky '' .
15.12.2025 16:23 ๐Ÿ‘ 1 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

This article suggests the possibility of training AI on pre-existing proposals and their review reports, scores and related decisions. I.e. training them on a system which is known to preferentially award larger amounts of money to white men. What could possibly go wrong?

04.12.2025 22:49 ๐Ÿ‘ 65 ๐Ÿ” 34 ๐Ÿ’ฌ 5 ๐Ÿ“Œ 3
Hackathon participants group picture

Hackathon participants group picture

We had an amazing OME-NGFF hackathon last week, Wednesday to Friday, following the inspiring OME-NGFF symposium. What a fantastic week! Itโ€™s hard to describe how motivating it is to be surrounded by so many talented, curious & friendly people who care deeply about open, FAIR bioimaging data.
1/14 ๐Ÿงต

17.11.2025 13:22 ๐Ÿ‘ 41 ๐Ÿ” 16 ๐Ÿ’ฌ 2 ๐Ÿ“Œ 1
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Hey Labour

Remember the majority of voters who believe in treating people decently and not stealing from those who've endured months and years of hardship fleeing war and persecution to seek a place of safety?

We're still over here ๐Ÿ‘‹

17.11.2025 07:49 ๐Ÿ‘ 1531 ๐Ÿ” 447 ๐Ÿ’ฌ 90 ๐Ÿ“Œ 41

Thanks for the feedback! The code was previously licensed under BSD-3, and I've just added a CC-BY 4.0 license for the content, so you're free to use, share, and remix as long as there's attribution

05.11.2025 10:00 ๐Ÿ‘ 2 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

Written by myself @uclengineering.bsky.social and colleagues at @ucl-arc.bsky.social , we're hoping this provides a useful primer on how to use the modern OME-Zarr data format to handle big bioimaging data.

04.11.2025 15:33 ๐Ÿ‘ 2 ๐Ÿ” 0 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
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An Introduction to OME-Zarr for Big Bioimaging Data

Today I'm announcing a new digital textbook ๐Ÿ“–๐Ÿ–ฅ๏ธ, "An Introduction to OME-Zarr for Big Bioimaging Data".

ome-zarr-book.readthedocs.io

04.11.2025 15:33 ๐Ÿ‘ 30 ๐Ÿ” 16 ๐Ÿ’ฌ 2 ๐Ÿ“Œ 0
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As LLMs manufacture a form of scholarship, presentation doesnโ€™t mean what it used to. D&S's Ranjit Singh looks at how this threatens the open-access research repository arXiv, how its founder is fighting to sustain its credibility, & what researchers can do to help. datasociety.net/points/on-ar...

30.10.2025 14:32 ๐Ÿ‘ 3 ๐Ÿ” 3 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 1
Crick BioImage Analysis Symposium 2025

A month to go! Will you be at #CBIAS2025?

The program is almost ready, and we look forward to welcoming you in London to discuss all things #BioImageAnalysis, from tool development, to biomedical applications and community building.

Register now! ๐Ÿ”—โฌ‡๏ธ

www.crick.ac.uk/whats-on/cri...

24.10.2025 08:48 ๐Ÿ‘ 4 ๐Ÿ” 3 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Over at `ome-zarr-models` we're working on implementing support for the new coordinate systems too - here's an example of a transformation graph from multiple tiled images that can be transformed into a common "world" coordinate system. ๐ŸŸฅ โžก๏ธ ๐ŸŒŽ

22.10.2025 09:24 ๐Ÿ‘ 6 ๐Ÿ” 3 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

My first paper as a journal editor! ๐ŸŽ‰๐Ÿ˜Š

10.10.2025 14:23 ๐Ÿ‘ 3 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
Inkscape - Draw Freely. | Inkscape Inkscape is professional vector graphics software which runs on Linux, macOS and Windows desktop computers.

I can recommend inkscape.org

11.09.2025 15:23 ๐Ÿ‘ 2 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
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RSEsForPalestine / RSEsForPalestine ยท GitLab GitLab.com

For a long time I've been wondering what RSEs can do to help uphold and support the basic human rights of Palestinians ๐Ÿ‡ต๐Ÿ‡ธ - today I've launched gitlab.com/rsesforpales... to collect and discuss actions we can take as a community.

01.09.2025 09:20 ๐Ÿ‘ 3 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
Text reads: Mozilla, in its finite wisdom, embedded LLM bots into recent versions of Firefox for the vitally-important purpose of... naming tab groups. Now, some users are noticing CPU and power usage spikes caused by a background process called Inference.

Ugh. Reminder again for Firefox users to visit your about:config page, search for the browser.ml.chat.enabled key, and set that to false:

Displayed is a screenshot of Firefox showing the config search bar with the listed search. The word "false" is circled in red.

Text continues: If yours says true then double-click it until it reads false.
Doing that turns off the Al chatbot features in Firefox, but also the stupid new LLM tab-naming feature that's rolling out.

Text reads: Mozilla, in its finite wisdom, embedded LLM bots into recent versions of Firefox for the vitally-important purpose of... naming tab groups. Now, some users are noticing CPU and power usage spikes caused by a background process called Inference. Ugh. Reminder again for Firefox users to visit your about:config page, search for the browser.ml.chat.enabled key, and set that to false: Displayed is a screenshot of Firefox showing the config search bar with the listed search. The word "false" is circled in red. Text continues: If yours says true then double-click it until it reads false. Doing that turns off the Al chatbot features in Firefox, but also the stupid new LLM tab-naming feature that's rolling out.

Just a heads up to anyone using Firefox:

30.08.2025 18:07 ๐Ÿ‘ 1382 ๐Ÿ” 707 ๐Ÿ’ฌ 37 ๐Ÿ“Œ 47
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The BBC News website has pages & pages of coverage related to farmers protesting inheritance tax, including events where only a few hundred turn out.

In London yesterday 100,000 people marched for trans rights, and nothing.

Imagine if it was 100,000 anti immigrant activists, they'd cover that.

27.07.2025 09:38 ๐Ÿ‘ 3471 ๐Ÿ” 1155 ๐Ÿ’ฌ 34 ๐Ÿ“Œ 38

๐Ÿš€ Big news! The napari hub has been reimplemented and is now community-run! :tada: It's still the go-to place for finding and sharing napari plugins, but the website is now snappier and lighter-weight. Check it out ๐Ÿ‘‰ www.napari-hub.org

23.07.2025 17:22 ๐Ÿ‘ 20 ๐Ÿ” 6 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0

"Gender neutral toilets are available on floor 1 and 15 of our London office." I am somehow reminded of the bit in "Hidden Figures" where the brilliant Black mathematician is forced to run across campus on her break to get to a bathroom she is allowed to use...

14.05.2025 11:08 ๐Ÿ‘ 563 ๐Ÿ” 143 ๐Ÿ’ฌ 15 ๐Ÿ“Œ 2