Alan Rice's Avatar

Alan Rice

@alanrice.ie

Human being ๐Ÿณ๏ธโ€๐ŸŒˆ๐Ÿ‡ฎ๐Ÿ‡ช Bioinformatician mostly working on viruses ๐Ÿฆ ๐Ÿงฌ๐Ÿ‘จโ€๐Ÿ’ป ๐Ÿ“ Dublin, Ireland He/him

343
Followers
559
Following
104
Posts
27.09.2023
Joined
Posts Following

Latest posts by Alan Rice @alanrice.ie

Preview
Glasgow Central Fire Sparks Travel Chaos Across the UK A major fire beside Glasgow Central has shut Scotlandโ€™s busiest station, triggering nationwide disruption and raising urgent questions over UK rail resilience.

Awful news about Glasgow Central, I'm still hoping the station itself escaped serious damage.
But while we're here, can anyone spot the problem with the news photo below, from thetraveler.org/glasgow-cent...?
We've really got to STOP using AI to fake things.

09.03.2026 08:28 ๐Ÿ‘ 561 ๐Ÿ” 145 ๐Ÿ’ฌ 52 ๐Ÿ“Œ 61

RNA-seq analysis in seconds using GPUs https://www.biorxiv.org/content/10.64898/2026.03.04.709526v1

06.03.2026 19:48 ๐Ÿ‘ 7 ๐Ÿ” 4 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Your regular reminder that the UK is in fact a high trust society and anyone who implies it isnโ€™t is either selling you a pup or has bought one.

05.03.2026 16:24 ๐Ÿ‘ 1154 ๐Ÿ” 337 ๐Ÿ’ฌ 42 ๐Ÿ“Œ 20
Post image

FT comments section this morning - saying what everyone else is thinking, right?

05.03.2026 07:15 ๐Ÿ‘ 17216 ๐Ÿ” 6004 ๐Ÿ’ฌ 516 ๐Ÿ“Œ 493
Preview
Clinical validation of a novel metagenomic nanopore sequencing method for detecting viral respiratory pathogens: diagnostic accuracy study Background Clinical metagenomics (CMg) offers high-throughput respiratory pathogen detection with a wider range than targeted, probe-dependent diagnostics. Sequencing cost and the challenges of high h...

New preprint from us @modmedmicro.bsky.social where we validate the diagnostic accuracy of a metagenomic nanopore sequencing method for respiratory RNA viruses.

www.medrxiv.org/content/10.6...

27.02.2026 11:48 ๐Ÿ‘ 9 ๐Ÿ” 9 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
Post image Post image Post image

The Irish Times really wants to make Maria Steen happen

25.02.2026 18:44 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Measles cases are resurging globally, but genomic surveillance at the global scale is sparse. In our new preprint, we show wastewater can provide population-level and low-cost data on virus spread and evolution.

See @kgandersen.bsky.social's post for a high level summary, more detail here though!๐Ÿงต

24.02.2026 18:12 ๐Ÿ‘ 18 ๐Ÿ” 10 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 1

i do think if you talk about people like this you should be put in the evil triangle from the SUPERMAN movies and hurled into space

21.02.2026 19:30 ๐Ÿ‘ 624 ๐Ÿ” 146 ๐Ÿ’ฌ 16 ๐Ÿ“Œ 1

Another example of AI slop as the aesthetic of modern fascism: lazy, ugly, moronic

21.02.2026 12:17 ๐Ÿ‘ 542 ๐Ÿ” 116 ๐Ÿ’ฌ 48 ๐Ÿ“Œ 5

This is absolute gold

21.02.2026 12:09 ๐Ÿ‘ 1534 ๐Ÿ” 376 ๐Ÿ’ฌ 87 ๐Ÿ“Œ 22
INDEPENDENT
Playgrounds would become 'crack dens' if Greens were in power, policing minister says

INDEPENDENT Playgrounds would become 'crack dens' if Greens were in power, policing minister says

Iโ€™m sorry, I know itโ€™s a minor point, but crack dens are traditionally indoor establishments. What the scaremongering Labour minister is describing here is a crack paddock.

21.02.2026 11:02 ๐Ÿ‘ 4936 ๐Ÿ” 840 ๐Ÿ’ฌ 166 ๐Ÿ“Œ 77

I'm sure that winning ยฃ3k feels nice for the grads involved in the claim, but it's not a lot of money in the grand scheme: not even a semester's worth of tuition and barely a drop in the bucket of student debt. But the impact on the sector and on individual unis could be devastating. What a waste.

19.02.2026 11:27 ๐Ÿ‘ 5 ๐Ÿ” 1 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0
Preview
Exclusive: US plans online portal to bypass content bans in Europe and elsewhere The U.S. State Department is developing an online portal that will enable people in Europe and elsewhere to see content banned by their governments including alleged hate speech and terrorist propagan...

Exclusive: The US State Department is developing an online portal to enable people in Europe and elsewhere to see content banned by their governments including alleged hate speech and terrorist propaganda, sources told Reuters reut.rs/4cySsA6

18.02.2026 22:17 ๐Ÿ‘ 885 ๐Ÿ” 557 ๐Ÿ’ฌ 261 ๐Ÿ“Œ 794

God there's always some new fresh hell

18.02.2026 19:27 ๐Ÿ‘ 19 ๐Ÿ” 6 ๐Ÿ’ฌ 1 ๐Ÿ“Œ 0
Post image

MENI is back! Join us in Dublin this August 2026 for our 3rd Meeting for Microbial Evolution in Ireland. We are delighted to have @rachelmwheatley.bsky.social @drrebeccajhall.bsky.social @jpjhall.bsky.social and @tweethinking.bsky.social join us as keynote speakers this year. miniurl.com/MENI

18.02.2026 12:16 ๐Ÿ‘ 40 ๐Ÿ” 28 ๐Ÿ’ฌ 2 ๐Ÿ“Œ 1

Always always take these people down to specifics. That's where they consistently fall apart.

18.02.2026 07:15 ๐Ÿ‘ 473 ๐Ÿ” 119 ๐Ÿ’ฌ 25 ๐Ÿ“Œ 5
Preview
Exclusive: Pentagon warns Anthropic will "pay a price" as feud escalates The Pentagon may label Anthropic a "supply chain risk," forcing all its vendors to sever ties.

"Anthropic is prepared to loosen its current terms of use, but wants to ensure its tools aren't used to spy on Americans en masse, or to develop weapons that fire with no human involvement.

The Pentagon claims that's unduly restrictive"

Sorry, what?

www.axios.com/2026/02/16/a...

16.02.2026 23:41 ๐Ÿ‘ 19 ๐Ÿ” 5 ๐Ÿ’ฌ 2 ๐Ÿ“Œ 0
Preview
Instagram Create an account or log in to Instagram - Share what you're into with the people who get you.

It is in the national interest that you are told Michael D Higgins has posted an Instagram reel montage, for Valentineโ€™s Day, of his late dog Brรณd

14.02.2026 11:49 ๐Ÿ‘ 155 ๐Ÿ” 39 ๐Ÿ’ฌ 7 ๐Ÿ“Œ 5
"Moderna's CEO announced the company will no longer invest in new Phase 3 vaccine trials for infectious diseases: 'You cannot make a return on investment if you don't have access to the U.S. market. Vaccines for Epstein-Barr virus, herpes, and shingles have been shelved.โ€
9:12 AM
Feb 12, 2026
604.8K Views

"Moderna's CEO announced the company will no longer invest in new Phase 3 vaccine trials for infectious diseases: 'You cannot make a return on investment if you don't have access to the U.S. market. Vaccines for Epstein-Barr virus, herpes, and shingles have been shelved.โ€ 9:12 AM Feb 12, 2026 604.8K Views

In terms of what cures are being lost:

- Epstein-Barr virus is perhaps the major trigger for multiple sclerosis
- herpes simplex virus causes cold sores, genital herpes, infections in babies, deadly meningitis
- shingles virus causes an intensely painful disease

13.02.2026 05:44 ๐Ÿ‘ 12539 ๐Ÿ” 6206 ๐Ÿ’ฌ 443 ๐Ÿ“Œ 783

It gets better:

12.02.2026 15:46 ๐Ÿ‘ 57 ๐Ÿ” 17 ๐Ÿ’ฌ 5 ๐Ÿ“Œ 1

The fact this is from Anthropic...

10.02.2026 16:33 ๐Ÿ‘ 0 ๐Ÿ” 0 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 0

Striking paper from researchers at Anthropic using a randomised control trial to look at the effects of AI use on skills acquisition.

TL:DR โ€˜We found that using AI assistance led to a statistically significant decrease in mastery.โ€™
www.anthropic.com/research/AI-...

04.02.2026 07:47 ๐Ÿ‘ 555 ๐Ÿ” 331 ๐Ÿ’ฌ 22 ๐Ÿ“Œ 61
Preview
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny - Nature Methods This Resource paper presents a global SARS-CoV-2 phylogenetic tree of 4,471,579 high-quality genomes consistently constructed by Viridian, an efficient amplicon-aware assembler.

A long time ago in a galaxy far away, there was a SARS-CoV-2 pandemic. Our paper, led by @martibartfast.bsky.social
a) correcting errors in 4.5 million genomes & their phylogeny
b) improving representation of the Global South in public data
www.nature.com/articles/s41...
(thread 1/n)

09.02.2026 15:16 ๐Ÿ‘ 137 ๐Ÿ” 66 ๐Ÿ’ฌ 3 ๐Ÿ“Œ 6

A good moment to recall that bitcoins are a, if not the, central plank of Farage's economic policy. It's an order of magnitude madder than Trussonomics: www.cityam.com/farages-cryp...

06.02.2026 19:29 ๐Ÿ‘ 358 ๐Ÿ” 150 ๐Ÿ’ฌ 12 ๐Ÿ“Œ 6
Post image

Do they understand how mad they sound? As if anyone has ever decided to cross the Channel in a small boat because, if they make it, they might get to take a free taxi to a doctor's appointment?

"Pull factors" on steroids.

www.bbc.com/news/article...

05.02.2026 07:01 ๐Ÿ‘ 1974 ๐Ÿ” 531 ๐Ÿ’ฌ 126 ๐Ÿ“Œ 71

[explaining to a child why they are living in poverty] for every hundredth pint i drink i can get one free pint

03.02.2026 12:49 ๐Ÿ‘ 600 ๐Ÿ” 194 ๐Ÿ’ฌ 15 ๐Ÿ“Œ 3

Nothing like enjoying your slightly cheaper pint while imagining the toddler crying from hunger that paid for it.

03.02.2026 15:44 ๐Ÿ‘ 1302 ๐Ÿ” 406 ๐Ÿ’ฌ 54 ๐Ÿ“Œ 11
Preview
Catherine Oโ€™Hara, โ€˜Schittโ€™s Creekโ€™ and โ€˜Home Aloneโ€™ Star, Dies at 71 Catherine O'Hara, a legendary Hollywood actor known for her roles in 'Schitt's Creek' and 'Home Alone,' has died. She was 71.

FUCK

30.01.2026 18:23 ๐Ÿ‘ 111 ๐Ÿ” 16 ๐Ÿ’ฌ 16 ๐Ÿ“Œ 7

Holy moly this chart: Cumulative US measles cases

28.01.2026 12:54 ๐Ÿ‘ 4827 ๐Ÿ” 2304 ๐Ÿ’ฌ 205 ๐Ÿ“Œ 653
Stepping Stones โ€ข River Dodder โ€ข Rathfarnham, Dublin, Ireland Latest prediction on whether the stepping stones over the River Dodder next to Bushy Park in Terenure, South Dublin are safe to cross.

I appreciate that anyone anywhere the Dodder is aware at this stage that it's quite high today but still I found it nice that this single-purpose website exists:

Is the Dodder too high to get across the stepping stones in Bushy Park? Currently: yes

dodder.eu

27.01.2026 19:24 ๐Ÿ‘ 24 ๐Ÿ” 10 ๐Ÿ’ฌ 0 ๐Ÿ“Œ 2