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naturepoker

@binomicalabs.org

Binomica Labs independent researcher by day, warehouse worker by night Small thoughtful science #phylogenetics #archaea #evolution #bioinformatics @naturepoker@genomic.social http://naturepoker.wordpress.com https://orcid.org/0000-0002-6977-5440

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Latest posts by naturepoker @binomicalabs.org

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ATP synthase activity boosts membrane proton acceptance and lateral diffusion | PNAS In most organisms, ATP synthesis is powered by the proton motive force (pmf) and catalyzed by ATP synthase. While the chemiosmotic theory originall...

πŸ“£ I was waiting for this paper for a while πŸ₯³
Our new paper in @pnas.org shows that ATP synthase drastically alters membrane properties related to proton diffusion. Funded by @volkswagenstiftung.de
www.pnas.org/doi/abs/10.1...

09.03.2026 09:58 πŸ‘ 5 πŸ” 5 πŸ’¬ 0 πŸ“Œ 0

Hahaha thank you that made me genuinely laugh. I ended up chucking the old packet.

Now I'm curious about metagenomic profile of expired salty condiments...

08.03.2026 20:28 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Fighting post-warehouse muscle cramps and plotting phylogenetic trees.... And I'm finally done! (for now)

I need a beer.

08.03.2026 20:02 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0
Men studying a dragon

Men studying a dragon

ENDOWED PROFESSORSHIP IN HISTORY OF SCIENCE
My home department at Uppsala University is advertising an endowed professorship in the history of science. This is the best position in the field in Sweden, and probably in all of Scandinavia. Apply before 30 April 2026. www.uu.se/en/about-uu/...

27.02.2026 19:20 πŸ‘ 179 πŸ” 151 πŸ’¬ 2 πŸ“Œ 6
GitHub - kahliburke/Tachikoma.jl: Build rich terminal apps in Julia β€” widgets, layouts, sixel graphics, Kitty graphics, animations, and more Build rich terminal apps in Julia β€” widgets, layouts, sixel graphics, Kitty graphics, animations, and more - kahliburke/Tachikoma.jl

#Julialang folks, did you check out Tachikoma.jl TUI framework yet? It looks pretty wild. I'm thinking of testing it out as a frontend for a bioinfo dashboard for a collaborator.

Hope the author is planning on giving a talk at the upcoming JuliaCon!

github.com/kahliburke/T...

06.03.2026 01:22 πŸ‘ 5 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Sleepy owl found resting among items on an antique store shelf in Durham The bird, an eastern screech owl, is nocturnal and typically nests in tree cavities. It is not immediately clear how it got inside the store.

Aw this is too cute.

Sleepy owl found resting among items on an antique store shelf in Durham

cnycentral.com/news/local/o...

02.03.2026 11:01 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Will do!

01.03.2026 08:04 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Rust based plotting - with rendering in terminal!

I use terminal plots all the time, it's just so much better than generating megabytes of png just to look at some transitionary data. Looking forward to learning this one.

πŸ’»πŸ§¬

01.03.2026 07:31 πŸ‘ 9 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0
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Looking at a new assembly against other putative members of its suspected genus.

The plot came out looking like something from an abstract expressionist work, I like it.

01.03.2026 07:28 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Joining the All-The-Bacteria project provides an annualised return on investment of 8.9% bacterial genomes.

27.02.2026 07:29 πŸ‘ 17 πŸ” 3 πŸ’¬ 0 πŸ“Œ 1
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Five ways to spot when a paper is a fraud Science sleuths share their common-sense tips for sniffing out fishy articles.

Delicious irony: a publishing giant making billions supposedly to filter out dodgy papers highlighting how unpaid volunteers outperform them at it. πŸ€·β€β™‚οΈπŸ€‘

#NatureRipoffs #ScienceCrisis @nature.com www.nature.com/articles/d41...

26.02.2026 06:54 πŸ‘ 14 πŸ” 5 πŸ’¬ 1 πŸ“Œ 0
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Past Ocean Depths Noteworthy β€” Archaeal lipids can serve as proxies of past ocean depths.

Paleobathymetry by looking at Archaeal lipid chemical structures. Very cool.

#Archaeasky 🦠🧫

smallthingsconsidered.blog/schaechter/2...

26.02.2026 13:53 πŸ‘ 2 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

Ohh that's a cool idea. I've never seen anyone do that before - I'll test it out as like a custom module method.

23.02.2026 12:29 πŸ‘ 0 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
Post image Post image

Morning commute in the city today. Yep we're definitely getting more than a foot of snow for sure. #nyc

23.02.2026 10:32 πŸ‘ 5 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
HOT FUZZ scene. Pegg as a cop talking to some underage kids in a pub

When’s your birthday?
22nd of February. 
What year?
Every year.

HOT FUZZ scene. Pegg as a cop talking to some underage kids in a pub When’s your birthday? 22nd of February. What year? Every year.

Happy birthday to this young man, and really to us all

22.02.2026 06:04 πŸ‘ 5458 πŸ” 1229 πŸ’¬ 30 πŸ“Œ 34
Painting of the Port Royal Monastery

Painting of the Port Royal Monastery

On today's new episode we tackle the Port-Royal Logic, the most influential philosophy textbook of early modern Europe, which combines ideas from Descartes with scholasticism:

www.historyofphilosophy.net/port-royal-l...

#logic #podcast #philsky #philosophy #podcast #earlymodern #hopwag

22.02.2026 09:54 πŸ‘ 38 πŸ” 8 πŸ’¬ 0 πŸ“Œ 2
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09.10.2025 13:17 πŸ‘ 628 πŸ” 149 πŸ’¬ 4 πŸ“Œ 0

Darn it. I'm all out of marmalade on the eve of another blizzard coming into NYC... And I don't think I have spirit left to face the ravenous Trader Joe's yuppies clutching bread with all the wild passions of a MΓ©duse survivor today.

22.02.2026 10:14 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
General Info Β· ShareAdd.jl Documentation for ShareAdd.jl.

Yeah I'm looking at keeping a separate shared env and using something like this - eben60.github.io/ShareAdd.jl/

22.02.2026 08:13 πŸ‘ 2 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Fellow #julialang heads:

I have a couple of modules (DataFrames, CSV, maybe FileIO etc) I don't want to have in base env, but used for everyday processing tasks.

What would you recommend between temp env (]activate --tmp, maybe aliased on cli) and shared env? I'm leaning toward the latter.

22.02.2026 02:52 πŸ‘ 0 πŸ” 0 πŸ’¬ 2 πŸ“Œ 0
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we live in the ruins of a greater civilization

13.02.2026 03:12 πŸ‘ 23263 πŸ” 5814 πŸ’¬ 161 πŸ“Œ 173

Definitely going to jump into rust in the future! One step at a time for me though

21.02.2026 23:35 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

Right? There's still mounds of snow on some streets around here too - so we're very likely getting something. I think mine's just a pavlonian reaction to the years of TV news weather coverage...

21.02.2026 22:54 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

NYC's been dry for so many winters now, I still can't believe we'll get that much snow (even after the last blizzard). We'll see

21.02.2026 22:46 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

Maybe I worded my post weirdly, but I wrote this in support of the article and your comment! (Let me know if it came across as otherwise - it's hard to tell these things on the net)

21.02.2026 22:27 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0
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Flower traits evolution in a bird‐pollinated genus Brandisia (Orobanchaceae) from Asia Brandisia (Orobanchaceae), an Asian hemiparasitic genus, shows striking floral divergence. All species are bird-pollinated, mainly by generalist nectarivores such as white-eyes. Variation in floral c...

🐦-πŸ₯€-🐦-πŸ₯€-🐦-πŸ₯€...
Chen et al.'sπŸ”₯new work on the #evolution of #flower traits in the bird-pollinated Brandisia advances our understanding of how #bird #pollinators shape floral diversification.
doi.org/10.1111/jse....
@wileyecology.bsky.social
#evolution #systematics #pollination

21.02.2026 17:05 πŸ‘ 11 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0

As someone who went through the school system here, I agree. It's amazing how much of public discourse & education in post 2000's US was still dictated by downright McCarthyist paranoia... And how erasure of social class translated into erasure of power structure in a country, which is just nuts.

21.02.2026 21:05 πŸ‘ 1 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

If people had understanding of GNU, copyleft, & how tech and research projects (from linux kernel to CERN) are run, it would be impossible to attribute hatred of tech to the ever-vaguely defined 'left'.

Billionaire managers & their cronies hijacked the sci/tech discussion in our society wholesale.

21.02.2026 20:57 πŸ‘ 0 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0

There's a blizzard warning in #nyc for Sunday night-Monday morning. I did not see that coming at all, past few unreasonably warm & dry winters spoiled me.

Still love that we got some real snow this season though...

21.02.2026 16:13 πŸ‘ 0 πŸ” 0 πŸ’¬ 0 πŸ“Œ 0

I keep finding myself where using the new programming language just takes a lot longer than alternatives. And with real projects to deliver, I need to either compromise or invest my personal time.

But I think it's worth it - I feel like I'm so close to having it just 'click' in my head

21.02.2026 16:11 πŸ‘ 2 πŸ” 0 πŸ’¬ 1 πŸ“Œ 0