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First line Multiqc CLI output, saying MultiQC, followed by a Xmas tree emoji and version 1.31
On a server bright on Christmas night,
MultiQC sang, “All stats unite!”
From FastQC, pipelines adored,
One tidy report—what could you want more?
Install or upgrade now:
pip install multiqc --upgrade
Full changelog and release notes: github.com/MultiQC/MultiQC/releases/tag/v1.33
Huge thanks to everyone who contributed to this release! 🙏
Bug fixes 🐛
• FastQC heatmap Plotly export fixed
• Sample filter buttons now work correctly
• Homer unique/total count swap corrected
• Samtools coverage no longer crashes on files with incorrect column counts
• Bar graph reference lines now work when horizontal
• Lima delimiter parsing fixed
Module updates 🔧
• fastp can now name samples using --report_title from the command
• Version fetching added for HiCUP, QoRTs, QualiMap, and RNA-SeQC
• BISCUIT module refactored for better consistency with the rest of the codebase
• Glimpse now shows more decimal precision in general stats table
Features and improvements ✨
• Sample groups configuration for visual grouping in bar graphs
• Custom logos now support dark mode and custom widths
• Configurable help text for General Stats
• Axis options for applying log scales to specific axes
• Custom content strips whitespace around categories
New modules 📦
• Seqkit stats: ultrafast FASTA/Q file manipulation toolkit
• RiboTish: Ribo-seq quality metrics for ribosome profiling
• Sylph: metagenomic profiling and containment ANI querying for shotgun sequencing
• BBsplit: new submodule for the BBtools suite
MultiQC v1.33 is out! 🎉
4 new modules, 60% faster parquet merging, and lots of improvements across the board. Here's what's new 🧵
Stay in the loop with everything @nextflow.io, @seqera.io, @multiqc.info, and more!✉️ Subscribe to our newsletter to get monthly updates on new product features, industry and community insights, events, and training workshops.
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Importance of being open!🌍 One of the greatest strengths of @multiqc.info is open source development.🧵What started as a one-person project in 2015 has grown into a collaborative effort involving 235 contributors today.🧵
📚 Read the blog post: hubs.la/Q03WRgb20
#NextflowSummit now available on-demand! Be sure to check out the "MultiQC turns 10" talk by @ewels.bsky.social 👀
💡A simple idea emerged from the frustration of manually parsing countless bioinformatics tool outputs.📊 That idea became MultiQC, and today we're celebrating 10 years of transforming global bioinformatics🌎
📗Read the highlights blog by @seqera.io: hubs.la/Q03TXC_N0
🎉 Celebrating 10 years of @multiqc.info! 📊 The numbers speak volumes:
🔹 Support for ~170 bioinformatics tools
🔹 1 run every 3 seconds (25k+ daily runs)
🔹 From single contributor to 235 contributors
🔹 7000+ journal citations (~8-9 per day)
📚 Discover a timeline of innovation:
hubs.ly/Q03PsbTP0
That and more! Custom Python scripts work too, you might like this quick recap of new features from in a short talk from 2024: youtu.be/-qwmeHyY6T0?...
🎉Celebrating 10 Years of @multiqc.info
What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm.
🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
I'm incredibly grateful for the amazing community that's contributed, provided feedback, and helped shape it into what it is today. This journey wouldn't have happened without you all, a testament to the power of #openscience
Here's to the next decade of making #bioinformatics QC beautiful! 🧬
🎉 Today marks 10 years since the very first @multiqc.info commit!
What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
9/
Tools you need:
FastQC: first defense
MultiQC: overview across samples
IGV: visualize coverage & peaks
PCA plots: always
Links:
www.bioinformatics.babraham.ac.uk/projects/fa...
multiqc.info/
software.broadinstitute.org/software/igv/
Modules #QUAST and #Trimmomatic got minor updates, and #VEP and #BclConvert got bugfixes. There were also a number of tweaks and fixes for AI summaries ✨
See the full changelog here: github.com/MultiQC/Mult...
Ever wanted to set report Toolbox settings from the CLI whilst generating reports? (highlight, hide, and rename samples) Now you can! We finally closed this ancient issue from 2016 🧓🏻🌈🎉 github.com/MultiQC/Mult...
See the docs to get started: docs.seqera.io/multiqc/gett...
Another quality of life improvement is that we now have a #JSONschema via @pydantic.dev for #MultiQC configuration files 🎉
This has been added to schemastore.org so that config files in #VSCode & other IDEs automatically get integrated error checking as you type, see docs.seqera.io/multiqc/gett...
Did you see, #MultiQC v1.28 went out a few days ago!
There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
🔗 QC reads with FastQC: www.bioinformatics.babraham.ac.uk/projects/fa...
RNAseqqc github.com/getzlab/rna...
🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/
Start every analysis with rigorous QC! 🚀
One of my top tools for primary data quality analysis, so essential for downstream analyses: #MultiQC. This recent update is incredibly useful!
seqera.io/multiqc/
github.com/MultiQC/Mult...
Multiqc, a rose emoji and the version (1.27.1)
Roses are red,
Violets are blue,
@multiqc.info knows it's Valentine too
The gold standard in #bioinformatics reporting just got even better! #AI Summaries are now available in @multiqc.info🎉
Find out more: hubs.la/Q033Kjp30
One of the cooler things I saw at the Nextflow summit a few months ago. Can't wait to try this.
We're really excited to hear what folks make of the new functionality. Give it a try now with v1.27 and check out the documentation at docs.seqera.io/multiqc/ai
github.com/MultiQC/Mult...
We made this functionality as flexible as possible. It works out of the box with @seqera.io AI and also #OpenAI and #AnthropicAI.
Reports also have "Copy prompt" options to paste into whatever LLM you like.
Read more in the blog post: hubs.ly/Q033KvM10
