📢 Mark your calendars!
We’re excited to announce the EuBIC-MS 2027 Hackathon!
📍 Gimo, Sweden
📅 31 January – 5 February 2027
💡 Have a hackathon idea?
The call for topic proposals is now open on the EuBIC GitHub repository: github.com/EuBIC/EuBIC2...
We’re looking forward to seeing you there!
We are happy to share that the preprint for Proteobench is available now on biorxiv!
Check it out here: www.biorxiv.org/content/10.6...
Congratulations and thanks to everyone involved for the great effort!
Early bird registration for the #EuBIC2026 Winter School has been extended until 10 December 2025. Register now!
#Proteomics #MassSpectrometry #Bioinformatics
Poster on EuBIC-MS at the poster session
At the snowy #HUPO2025 in Toronto? ❄️
Come and join us tonight for a chat at the #FriendsOfHUPO poster session. You'll find us right in front of the Frontenac Ballroom.
Join us for the Bioinformatics Hub Session about Proteobench next week at this years @hupo-org.bsky.social World Congress in Toronto!
Big shout out to @eupaproteomics.bsky.social and the Czech Society for Mass Spectrometry (CZMS) for making this event possible, and to @denbi.bsky.social and @matrixscience.bsky.social for sponsoring!
Register now! Five days of keynotes, workshops, flash talks, posters, and more on computational mass spectrometry Confirmed keynote speakers Armin Soleymaniniya · Arthur Declercq · Claire Koenig · Hannah Boekweg · Jonas Scheid · Karel Berka · Matthias Anagho-Mattanovich · Roman Bushuiev · Valdemaras Petrosius 📆 19-23 January 2026 📍 Harrachov, Czechia
Registration is now open for the EuBIC-MS Winter School 2026!
Join us in Harrachov, Czechia for a week of keynotes, workshops, and networking on computational MS.
Info and registration: eubic-ms.org/events/2026-...
#EuBIC2026 #MassSpectrometry #MassSpec #Bioinformatics #Proteomics #Metabolomics
Last week we had our yearly organizational meeting, this time in Vienna, Austria. We had 3 great days discussing the activities of the past year and planning the upcoming ones. Thanks to everyone who joined and contributed to a great meeting!
Today at 16:00 CEST we're having our monthly online meeting to discuss our projects and oncoming events. Everyone is welcome to join!
If you're new to EuBIC-MS, join 15 mins earlier today for a quick tour of EuBIC-MS!
To join, go to eubic-ms.org/become-a-mem... and find the meeting URL on Slack.
Conference stage with Marie Locard-Paulet, the chairs, and the opening slide in the background.
Marie Locard-Paulet presenting the EuBIC-MS #ProteoBench project at the #EuPA2025 conference.
👉 Learn more about our open proteomics software benchmarking platform at proteobench.readthedocs.io.
#Proteomics #Bioinformatics #Benchmarking
Big thanks to our three speakers for their great talks: Julian Uszkoreit (@uszkoreitju.bsky.social), Yannic Chen, and Harikrishnan Ramadasan (@harirmds.bsky.social).
Also a big thanks to everyone who attended and participated in the discussion session!
#EuPA2025 @eupaproteomics.bsky.social
EuBIC-MS session at EuPA 2025 Tuesday June 17, 10:15 - 12:00, Room Vauban 1 Ralf Gabriels Introducing EuBIC-MS 10:15 - 10:30 Julian Uszkoreit O85 - What can we gain - a comparison of common search engines and post-processing methods 10:30 - 10:45 Yannic Chen O84 - Benchmarking Database Search Engines for DDA-based Immunopeptidomics 10:45 - 11:00 Harikrishnan Ramadasan O86 - Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0 11:00 - 11:15 Interactive discussions on open challenges in computational proteomics 11:15 - 12:00
Join us in Saint-Malo for the #EuBIC-MS session at #EuPA2025!
After a short introduction, we have three exciting talks lined up, as well as an interactive discussion on open issues in computational proteomics.
@eupaproteomics.bsky.social @uszkoreitju.bsky.social @harirmds.bsky.social
And big thanks also to the @eubic-ms.org hackathon team contributing to our #SpectriPy package github.com/RforMassSpec... !
Next on the list submission of the package to 👉 @bioconductor.bsky.social
Thanks to the incredible work of @enryh.bsky.social, now #quantms is part of #ProteoBench. You can benchmark DDA LFQ data within ProteoBench using proteomicLFQ (#OpenMS algorithm) using quantms and ProteoBench. #OpenData #OpenSource @eubic-ms.org 🔥🚀
proteobench.readthedocs.io/en/stable/av...
Got a brilliant keynote speaker in mind? We're collecting suggestions for the EuBIC‐MS Winter School 2026 in the Czech Republic next January. Share your ideas now: forms.gle/6Y1ibMuezEB1...
#EuBIC2026 #TeamMassSpec #ProteomicsSky
This year's Developers Meeting ended less than a month ago, but we are already looking for a location for the next one! Would you like to propose a location for the Developers Meeting in 2027?
Make your suggestion here before the 7th of March:
github.com/EuBIC/EuBIC2...
Group picture of all EuBIC2025 participants in front of snowy pine trees. Captioned "EuBIC-MS Developers Meeting 2025, Neustift Abbey, Italy, 2-7 February 2025, Sponsors: de.NBI, Matrix Science, and Biognosys. Powered by EuPA"
The EuBIC-MS Developers Meeting 2025 was a blast! Thanks to all participants, hackathon organizers, EuPA, and especially our sponsors: @denbi.bsky.social, @matrixscience.bsky.social, and @biognosys.bsky.social.
#EuBIC2025
@denbi.bsky.social supports this week the @eubic-ms.org Developer Meeting 2025 at Abbey of Neustift, Vahrn (IT).
Audience in lecture hall
Pavel Sinitcyn presenting
Katerina Nastou presenting
Will Fondrie presenting
The EUBIC-MS Developers Meeting 2025 in Brixen is off to a great start with keynotes by Pavel Sinitcyn, Katerina Nastou, and @willfondrie.com.
#EuBIC2025
🚨 Big news, #TeamMassSpec! 🚨
How do we unlock proteomics data reuse, tackle metadata challenges, and harness public (clinical) data for AI?
Find out at HUPO-PSI Spring Meeting 2025!
📅 March 31 – April 3, 2025
📍 Tübingen, Germany
(1/4)
In hopes that I won’t get lost en route to the EuBIC-MS developers meeting in Feb, I’ve started learning Italian with Duolingo. 🇮🇹
Fantastico! Un cornetto e un caffè, per favore 🥐 ☕️
I’m super excited and I think I have the essentials learned 😂
Have you ever noticed how benchmarking #proteomics data analysis can be a wild west?
EuBIC-MS community members did, and started #ProteoBench: An open platform for comparing proteomics data analysis workflows.
Learn more at the webinar (27 Feb, 18h CET) Register here: bit.ly/3SfS4Lf
Ben, Ben, and guest Micha recording the podcast
Recording the podcast before a live audience.
Thumbnail for The Proteomics Show, Live from Winterberg
A first time for a EuBIC-MS event: The live recording of a podcast. @benneely.com and @proteomicsnews.bsky.social just recorded an episode of The Proteomics Show live from Winterberg at the #EuBIC2024 Winter School🎙️❄️
Listen now: podcasters.spotify.com/pod/show/the...
Not sure how much of EuBIC is actually on Bluesky, but @magnuspalmblad.bsky.social has a feed for the conference to capture the hashtag. Get it!
Thomas Burger presents remotely at the EuBIC-MS Winter School 2024
Cecilia Lindskog presenting at the EuBIC-MS Winter School 2024
Ben Neely presenting at the EuBIC-MS Winter School 2024
After the educational day with hands-on tutorials, day 2 of the #EuBIC2024 Winter School started with great keynotes by Thomas Burger, Cecilia Lindskog, and @benneely.com.
EuBIC Winter School 2024 Five days of keynotes, workshops, flash talks, posters, and more on computational mass spectrometry 15-19 January 2024 @ Winterberg, Germany https://www.eubic-ms.org/events/2024-winter-school Keynote speakers: Ben Neely, Cecilia Lindskog, Dirk Valkenborg, Juan Antonio Vizcaino, Laurent Gatto, Nils Hoffmann, Niveda Sundararaman, Robbin Bouwmeester, Thomas Burger, Wen-Feng Zeng Special guest: Ben Orsburn Sponsors: MSAID, Evosep, Matrix Science, Bioinformatics Solutions Inc Powered by: EuPA, PROTrEIN, de.NBI
Today is the last day to:
🐦 Register with extended early bird
📃 Submit an abstract for a flash talk / poster
for the #EuBIC2024 Winter School on computational mass spectrometry.
Check out the full program on eubic-ms.org/events/2024-...
#teammassspec #proteomics #compms
EuBIC Winter School 2024 Five days of keynotes, workshops, flash talks, posters, and more on computational mass spectrometry 15-19 January 2024 @ Winterberg, Germany https://www.eubic-ms.org/events/2024-winter-school Keynote speakers: Ben Neely, Cecilia Lindskog, Dirk Valkenborg, Juan Antonio Vizcaino, Laurent Gatto, Nils Hoffmann, Niveda Sundararaman, Robbin Bouwmeester, Thomas Burger, Wen-Feng Zeng Special guest: Ben Orsburn Sponsors: MSAID, Evosep, Matrix Science, Bioinformatics Solutions Inc Powered by: EuPA, PROTrEIN, de.NBI
Only four more days for early bird registration for the #EuBIC2024 Winter School ⏲️
Registration info on eubic-ms.org/events/2024-...
