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Martina Pavlek

@mpavlek

Caves and spider lover. Especially spiders in caves πŸ™‚. Trying to answer how, why and when they and other cave critters conquered caves.

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20.10.2023
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Latest posts by Martina Pavlek @mpavlek

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The Politics of Taxonomy - Tangled in a Web of Inequalities Discover the latest news from The Linnean Society of London.

What can spider names tell us about the tangled web of author inequalities?

A recent paper in @biojlinnsoc.bsky.social by Montana et al. looked at every spider described from the Americas in 1946-2021, analysing over 9,000 species and nearly 600 researchers.

Read more:

07.03.2026 09:00 πŸ‘ 8 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0
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LinnΓ©Sys: Systematics Research Fund Grants for small-scale research and education projects on taxonomy and systematics

Calling all systematics and taxonomy researchers! Applications are now open for our Linnesys grants.

Run with the Systematics Association, the scheme supports small-scale research and education projects with grants of up to Β£1,500.

Find out more and apply by Friday 27 March
buff.ly/WrVmOnY

06.03.2026 12:06 πŸ‘ 6 πŸ” 4 πŸ’¬ 0 πŸ“Œ 0

Preprint: Dishonesty can be based on honesty.
Increased pheromonal attractiveness despite reduced pheromone production in a aging female spider.
Senescent widow spiders are poor mates but remain attractive to mate-seeking males through deceptive signalling.
doi.org/10.64898/2026.03.04.709482

06.03.2026 09:35 πŸ‘ 0 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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In @ecoevorxiv.bsky.social, we just released a open dataset on subterranean spiders, with >30000 georeferenced localities for >600 cave spider species:

doi.org/10.32942/X2M...

The kind of information we need to implement evidence-based subterranean conservation!

27.01.2026 10:26 πŸ‘ 10 πŸ” 3 πŸ’¬ 1 πŸ“Œ 0
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#Subterranean #habitats host unique species that remain largely under-explored.

New study on the endemic ground Trechus #beetles of Portugal, currently Red Listed as Endangered, revealed an interesting #evolutionary trajectory.

⬇️Uncover what the study found here: doi.org/10.3897/subt...

25.02.2026 16:44 πŸ‘ 0 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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#ArticleIRBio
πŸ“„ chromosome-level genome assembly of the blind scorpion Belisarius xambeui Simon, the most singular scorpion in Europe
πŸ‘₯S.GuiraoRico, VA.Pisarenco, M.DomΓ¨nech,ABellvert,SAdriΓ‘nSerrano,ASΓ‘nchezGracia,M.Arnedo, J.Rozas
πŸ“• ERGA-BGE-CBP
πŸ”— open-research-europe.ec.europa.eu/articles/6-5...

26.02.2026 10:40 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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The biodiversity, genomics, ecology and evolution of mushroom-forming fungi - Nature Reviews Biodiversity Mushroom-forming fungi have along evolutionary history and a suite of important ecological roles. This Review highlights advances in understanding of Agaricomycetes evolution and ecology driven by gen...

Everything you always wanted to know about mushroom-forming fungi! Great collab with amazing mycologists. Thanks Laszlo Nagy for leading this effort!

www.nature.com/articles/s44...

03.12.2025 13:21 πŸ‘ 69 πŸ” 34 πŸ’¬ 2 πŸ“Œ 0
PearTree β€” Phylogenetic Tree Viewer

So I pleased to announce the conceptual spawn of FigTree: PearTree (acronym still to be finalised). If you want to dive right in it is hosted as a web app here: artic-network.github.io/peartree (click the β€œExample...” button for immediate candy and then click every button you can find).

28.02.2026 19:01 πŸ‘ 160 πŸ” 99 πŸ’¬ 5 πŸ“Œ 4
Scientists Discover Colossal Spider Web in Stinking Cave
Scientists Discover Colossal Spider Web in Stinking Cave YouTube video by The New York Times

Footage of the World Wide(st) Web - in a smelly cave in the Balkans.

πŸ•·οΈπŸ•ΈοΈ

πŸ§ͺ

youtube.com/shorts/8yhOF...

19.02.2026 14:09 πŸ‘ 12 πŸ” 5 πŸ’¬ 2 πŸ“Œ 1
The colonial spider web in Sulfur Cave, is home to a mixed colony of Tegenaria domestica and Prinerigone vagans. A. Side view; B. frontal view. The swarm of adult chironomids is visible near the cave stream. Photo A: Marek Audy.

The colonial spider web in Sulfur Cave, is home to a mixed colony of Tegenaria domestica and Prinerigone vagans. A. Side view; B. frontal view. The swarm of adult chironomids is visible near the cave stream. Photo A: Marek Audy.

Biggest spider web in the world: the area of a flat.

Found in a sulphur-smelling cave in the Balkans, this ~100mΒ² spongy web is maintained by two species of solitary πŸ•·οΈ. The 110K inhabitants feed on midges, probably because they can't see the other spiders.

πŸ§ͺ
subtbiol.pensoft.net/article/1623...

19.02.2026 14:09 πŸ‘ 30 πŸ” 11 πŸ’¬ 3 πŸ“Œ 5

Read more about this Arachnopolis here: doi.org/10.3897/subt...

20.02.2026 08:09 πŸ‘ 2 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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🧬 Hiring Postdocs at @astar_gis !

We need Computer Scientists and Computational Biologists to develop novel algorithms for de novo assembly of cancer genomes or to help us reconstruct them.

Experience in sequence alignment/assembly algorithms or assembly of complex genomes required

Please RT! πŸ”„

14.02.2026 02:09 πŸ‘ 1 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0

Let's look at some numbers

2022: 7 044 applications submitted. 17.9 % success rate
2023: 8 039 applications submitted. 15.8 % success rate
2024: 10 360 applications submitted. 16.6 % success rate
2025: 17 058 applications submitted (record high). 9.7% success rate (preliminary numbers).

09.02.2026 10:42 πŸ‘ 19 πŸ” 5 πŸ’¬ 3 πŸ“Œ 6
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Long-read sequencing can revolutionise the way we monitor #biodiversity.

A comprehensive guide for using #ONT & #PacBio for analysis of biodiversity through #eDNA, #metabarcoding, metagenomics

Just published in @methodsinecoevol.bsky.social
besjournals.onlinelibrary.wiley.com/doi/10.1111/...

03.02.2026 15:55 πŸ‘ 30 πŸ” 15 πŸ’¬ 0 πŸ“Œ 0

Highlight of our review paper on long-read sequencing for biodiversity analysis by the EBP @ebpgenome.bsky.social

#BiodiversityGenomics #eDNA #Biodiversity
#PacBio #ONT

Read @methodsinecoevol.bsky.social doi.org/10.1111/2041...

10.02.2026 11:12 πŸ‘ 7 πŸ” 3 πŸ’¬ 0 πŸ“Œ 0
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Subterranean ecosystems are key to water, climate, biodiversity & culture. But to what extent?

As part of @biodiversa.eu DarCo we demonstrate that they contribute to 75% of classified ecosystem services. Read OA in Biol Rev:

doi.org/10.1002/brv....

Illustration @jmalumbresolarte.bsky.social

10.02.2026 14:01 πŸ‘ 9 πŸ” 4 πŸ’¬ 0 πŸ“Œ 1
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Resurrected nitrogenases recapitulate canonical N-isotope biosignatures over two billion years - Nature Communications The study shows that nitrogenase enzymes have maintained stable isotope signatures over billions of years, revealing how ancient microbes shaped Earth’s nitrogen cycle and offering a new experimental ...

Our new paper, out today! We resurrected ancient nitrogenases first used by life on Earth 3 billion years ago. We combined synthetic biology and geology & validated their chemical #biosignature in rocks that helps reveal ancient life on Earth!(and beyond!)

Link: www.nature.com/articles/s41...

30.01.2026 21:12 πŸ‘ 66 πŸ” 23 πŸ’¬ 2 πŸ“Œ 3
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Spiders possess multiple types of silk glands, which produce silk materials with contrasting properties.
What happens if they combine different silks into a single line - Does this reinforce, even toughen, the silk thread?

We got some answers from cellar and cave spiders:
doi.org/10.1039/D5SM... πŸ”“

29.01.2026 11:30 πŸ‘ 2 πŸ” 2 πŸ’¬ 0 πŸ“Œ 0
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An ancient genome duplication event drives the development and evolution of spinnerets in spiders A genome duplication event during the Silurian played a crucial role in the evolutionary emergence of spinnerets in spiders.

Chromosome-scale #genomes from newly sequenced spiders & the whip scorpion, the genetic basis of spinneret emergence in spiders & the complex history & functional importance of arachnid genome #evolution www.science.org/doi/10.1126/... #biodiversity #genomics

30.01.2026 11:10 πŸ‘ 44 πŸ” 18 πŸ’¬ 1 πŸ“Œ 1
AI-generated graphical summary of the DNA replication origins study

AI-generated graphical summary of the DNA replication origins study

πŸ“’new study @genomedatalab.bsky.social

When a cell divides, it copies 3 billion DNA letters. How does it know where to begin?

⁉️For years, the field debated if replication initiation was random or strict

πŸ“œOur preprint uses AI + mutation signatures to show it’s a precise, two-part system

02.01.2026 16:53 πŸ‘ 3 πŸ” 1 πŸ’¬ 1 πŸ“Œ 0

And here's the report @qedscience.bsky.social generated for our new paper, summarizing what's new and what was already known before. I'm planning to submit q.e.d's reports as cover letters together with my pre-prints from now on (and so should you!)

18.12.2025 11:30 πŸ‘ 33 πŸ” 8 πŸ’¬ 2 πŸ“Œ 2
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Assessing the Impact of Whole Genome Duplication on Gene Expression and Regulation During Arachnid Development Abstract. Whole genome duplication (WGD) generates a new genetic material that can contribute to the evolution of developmental processes and phenotypic di

A genome-wide comparison of #gene regulatory sequences & embryonic gene expression in arachnids - new insights into the impact of the arachnopulmonate whole #genome duplication academic.oup.com/gbe/article/... #biodiversity #genomics

23.12.2025 13:11 πŸ‘ 23 πŸ” 10 πŸ’¬ 0 πŸ“Œ 0

a life changing opportunity made possible by the Nobel Prize funds awarded to John Sulston -- the @sangerinstitute.bsky.social runs the Sanger Prize scheme, open to an undergrad from any LMIC to spend 3 months here learning all about genomics. more details here www.sanger.ac.uk/about/study/...

20.11.2025 17:39 πŸ‘ 9 πŸ” 16 πŸ’¬ 1 πŸ“Œ 1
The commitments in the SAFE Labs Handbook.

The commitments in the SAFE Labs Handbook.

A new community-driven lab handbook for reducing conflict and creating more positive and equitable work environments gets strong support from a survey of 200 researchers.
buff.ly/K7CGFLV

09.12.2025 11:02 πŸ‘ 38 πŸ” 24 πŸ’¬ 0 πŸ“Œ 2
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The Idiot's Guide to Effective Population Size This is a reference manual for the elegant, yet hideously complex concept of effective population size (Ne), inspired by a classic, self-published manual of automotive repair β€˜for the compleat idiot’...

I have only read the abstract so far, but that is enough to see that this should be a useful paper for those whose work confronts the "hideously complex concept of effective population size"
onlinelibrary.wiley.com/doi/full/10....

09.12.2025 13:30 πŸ‘ 1 πŸ” 1 πŸ’¬ 0 πŸ“Œ 0
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Global sampling decline erodes science potential of natural history collections - Nature Communications Natural history collections hold over two billion specimens representing Earth’s biodiversity, but their scientific value depends on continued specimen collection and digitisation. This study demonstr...

In an era marked by rapid climate change and biodiversity loss, it is imperative that we continue to invest in the unique value of natural history collections data

"Global sampling decline erodes science potential of natural history collections" πŸ§ͺ

26.11.2025 02:10 πŸ‘ 56 πŸ” 24 πŸ’¬ 1 πŸ“Œ 1

I’m recruiting a postdoc to work on algorithms for cancer genome reconstruction. We have access to a rich set of tumour samples sequenced across multiple technologies. If interested, feel free to DM. Please share.

11.12.2025 03:04 πŸ‘ 13 πŸ” 12 πŸ’¬ 0 πŸ“Œ 1
Abstract submission & Award applications for SMBE 2026 are now open!

Abstract submission & Award applications for SMBE 2026 are now open!

Abstract submission & Award applications for SMBE 2026 are now open!

Submit your research and apply for SMBE awards via the submission portal.
πŸ“ Read more & submit here: smbe2026.org/abstracts

And symposium selection is now finalized!
πŸ‘‰ See all accepted symposia: smbe2026.org/programme

#SMBE2026

01.12.2025 09:56 πŸ‘ 24 πŸ” 21 πŸ’¬ 2 πŸ“Œ 7
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Please help! We are looking for tissue-specific RNA-seq datasets or pubs with both male and female individual gene expression data, not pooled, from animal species. If you know of any relevant resources, please drop a link in the comments or send me a DM. Also, please help spread the word - thanks!

05.12.2025 15:20 πŸ‘ 26 πŸ” 28 πŸ’¬ 7 πŸ“Œ 1
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Join us in Crete in May 2026 for the Mathematical and Computational Evolutionary Biology Meeting mceb2026.sciencesconf.org on the island's northern coastline near Heraklion. Abstract Deadline: January 31st

05.12.2025 07:26 πŸ‘ 7 πŸ” 5 πŸ’¬ 0 πŸ“Œ 0