For more information, check out the following-
Alphabase GitHub: github.com/MannLabs/alp...
Alphapepttools GitHub: github.com/MannLabs/alp...
Zoom registration link for the meeting: scverse.zulipchat.com#narrow/chann...
We will have our next community meeting on Tue, March 17, 2026, 11AM CST/ 9AM PST !
Lucas Diedrich and Vincenth Brennsteiner, will be presenting on Alphabase and Alphapepttools: tools to make proteomics analyses easier.
Zoom registration link in 🧵
Key details
- Online workshop
- September 14-16, 2026
- 3 x 4 hours of content
You can find the full schedule here: www.physalia-courses.org/courses-work...
We look forward to seeing you!
Our core team members, Sara Jimenez and Tim Treis, in collaboration with Physalia courses, will guide participants from preprocessing and quality control through to the analysis of spatial omics data.
We're excited to announce that registration for our upcoming Spatial Omics workshop has opened!
Details in 🧵
For more information, check out the following-
Website: biomni.stanford.edu
Paper: biomni.stanford.edu/paper.pdf
GitHub: github.com/snap-stanfor...
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
We will have our next community meeting on Tue, Feb 17, 2026, 11AM CST/ 9AM PST !
Kexin Huang, will be presenting on Biomni: a general-purpose biomedical agent.
Details in 🧵
For more information, check out the following-
Website: biomni.stanford.edu
Paper: biomni.stanford.edu/paper.pdf
GitHub: github.com/snap-stanfor...
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
We will have our next community meeting on Tue, Feb 17, 2026, 11AM CST/ 9AM PST !
Kexin Huang, will be presenting on Biomni: a general-purpose biomedical agent.
Details in 🧵
For more information, check out their documentation (lnkd.in/gTSrBNSn)!
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
We will have our next community meeting on Tue, Feb 3, 2026, 11AM CST/ 9AM PST !
Philipp A will be presenting on HoloViz: High-level tools to simplify visualization in Python.
Details in 🧵
For more information, check out their documentation (hv-anndata.readthedocs.io/en/latest/)!
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
We will have our next community meeting on Tue, Feb 3, 2026, 11AM CST/ 9AM PST !
Philipp A will be presenting on HoloViz: High-level tools to simplify visualization in Python.
Details in 🧵
For more information, check out their website (singlerust.com) and preprint (biorxiv.org/content/10.1...) !
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
We will have our first community meeting of 2026 on Tue, Jan 20, 2026, 11AM CST/ 9AM PST !
Ian Ferenc Diks (@ianfd.bsky.social) will be presenting on SingleRust: A High-Performance Toolkit for Single-Cell Data Analysis at Scale.
For more information, check out their website (singlerust.com) and preprint (www.biorxiv.org/content/10.1...) !
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
We will have our first community meeting of 2026 on Tue, Jan 20, 2026, 11AM CST/ 9AM PST !
Ian Ferenc Diks will be presenting on SingleRust: A High-Performance Toolkit for Single-Cell Data Analysis at Scale.
We’re looking for someone who:
• Communicates clearly
• Enjoys open-source collaboration
• Has scientific/computational background
• May have design or social media skills
📍 Munich or remote
🕒 Part- or full-time
🏢 Helmholtz Munich / Theis Lab
💡 TVöD up to E13
You’ll help:
• Coordinate our international community
• Host meetups + support workshops, hackathons, conferences
• Communicate releases & community milestones
• Contribute to visual identity and outreach
• Support sponsorships & training materials
We’re looking for a Community Manager to help shape and support the growing scverse ecosystem.
Deadline January 10, 2026!
More details here: jobs.helmholtz-muenchen.de/jobposting/d...
We will have our final community meeting of 2026 on Tuesday, 2025-12-09 at 11:00 CST/ 9:00 PST!
Mikaela Koutrouli (@MKoutrouli) will wrap up a great year of meetings by giving an update on the state of scverse!
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
We will have our final community meeting of 2026 on Tuesday, 2025-12-09 at 11:00 CST/ 9:00 PST!
Mikaela Koutrouli (@mkoutrouli.bsky.social) will wrap up a great year of meetings by giving an update on the state of scverse!
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
We wrapped up an inspiring week with a visit to NVIDIA headquarters right after the scverse conference. Huge thanks to the NVIDIA Healthcare team and @severin7.bsky.social for hosting us and for the great discussions on scaling single-cell analysis and accelerating open science ⚡️
BioContextAI: Biomedical Model Context Protocol servers for composable agentic systems.
For more information, check out their website: biocontext.ai and publication: nature.com/articles/s41...
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST!
Malte Kuehl (@maltekuehl.com) will be presenting on BioContextAI!
More information and Zoom registration link in 🧵
Full house for our Bi[o]hub workshop on Day 3!
Communities aren’t just built, they are co-created.
Together, we’re shaping an open, connected world of all-things-single-cell research, where sharing tools and ideas drives discovery.
BioContextAI: Biomedical Model Context Protocol servers for composable agentic systems.
For more information, check out their website: biocontext.ai and publication: nature.com/articles/s41...
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST!
Malte Kuehl (@maltekuehl.com) will be presenting on BioContextAI!
More information and Zoom registration link in 🧵
We are proud to announce that we're partnering with @biocontext.ai (biocontext.ai), a new open-source initiative for building agentic systems in biomedical research. Learn more in our announcement: scverse.org/blog/2025-11...
We just released scanpy 1.12rc1 (scanpy.readthedocs.io/en/latest/re...)
Highlights:
- Dask support in `sc.get.aggregate` for pseudobatching + `highly_variable_genes(flavor='seurat_v3')`
- More functions allow specifying `layers` and `obsm`
- Turn off quirky behavior (new defaults for scanpy 2.0)
