Hide Doi Lab.'s Avatar

Hide Doi Lab.

@doi-lab

Hide Doi Lab., Biosphere Informatics Lab., Kyoto University, Japan. We are interested in ecology and environmental sciences, especially, community ecology, food web, eDNA, climate change https://ecologyweb.jimdofree.com

435
Followers
297
Following
7
Posts
20.03.2024
Joined
Posts Following

Latest posts by Hide Doi Lab. @doi-lab

Preview
Long‐Term Records Reveal Temperature‐Driven Nutrient Limitation and Predict Intensified Algal Blooms in Global Lakes This graphical abstract illustrates the analytical framework and key outcomes of each step used to investigate the temperature–nutrient regulation of harmful algal blooms in global lakes. (A) Multi-y...

Our new paper is published in Global Change Biology. Using long-term global lake dataset, we found temperature-driven nutrient limitation on algal bloom in lakes.

onlinelibrary.wiley.com/doi/10.1111/...

20.02.2026 11:58 👍 5 🔁 2 💬 0 📌 0
Preview
Species Interactions Determine the Importance of Response Diversity for Community Stability to Pulse Disturbances Caculations of response diversity can be based on species fundamental responses in isolation or their realised responses in the community using metrics of response dissimilarity and response divergen...

onlinelibrary.wiley.com/doi/10.1111/...

@ckunze.bsky.social tested whether the concept of response diversity holds for pulse disturbances & realized response diversity. Turns out interaction strength is key. Great collaboration w @owpet.bsky.social & Shyamolina Gosh @icbm-uol.bsky.social @hifmb.de

03.01.2026 20:37 👍 23 🔁 6 💬 0 📌 0
Preview
Microbial mechanisms underlying the reduction of soil mineral nitrogen availability by ectomycorrhizal tree introduction in cedar plantations - Plant and Soil Background and aims Forest mycorrhizal type and soil acidity strongly influence soil nitrogen (N) availability. Arbuscular mycorrhizal pure cedar plantations are expected to exhibit higher soil minera...

Our paper is out in Plant and Soil!🎉 Microbial mechanisms underlying the reduction of soil mineral nitrogen availability by ectomycorrhizal tree introduction in cedar plantations🌲🌳Many thanks Sawada-san for leading this great work!!
link.springer.com/10.1007/s111...

19.12.2025 12:09 👍 5 🔁 3 💬 0 📌 0
Redirecting

🌱 New paper out
We confirm that the three-dimensional structure of nature’s values (i.e., instrumental, intrinsic, and relational values) also holds in Japan.
In addition, traditional worldviews, such as animism and anthropomorphism, are associated with relational values.
doi.org/10.1016/j.cr...

19.12.2025 08:22 👍 2 🔁 3 💬 0 📌 0

Our new paper in Nature Comm. leading @ecolgonzalez.bsky.social found global patterns and driving mechanisms of organisms’ stoichiometry!

13.12.2025 00:39 👍 2 🔁 0 💬 0 📌 0
Preview
Nitrogen deposition reveals global patterns in plant and animal stoichiometry - Nature Communications Organisms vary in their nitrogen and phosphorus content, shaping ecological and evolutionary processes. This study shows that nitrogen deposition is a consistent global factor associated with plant an...

Thrilled to share our new #stoichiometry paper on the environmental correlates of plant and animal stoichiometry. This was a fantastic collaborative work supported by #idiv www.nature.com/articles/s41...

09.12.2025 21:07 👍 35 🔁 19 💬 0 📌 2
Preview
Nitrogen deposition reveals global patterns in plant and animal stoichiometry - Nature Communications Organisms vary in their nitrogen and phosphorus content, shaping ecological and evolutionary processes. This study shows that nitrogen deposition is a consistent global factor associated with plant an...

🧵1/5
🌍🔬 Our new paper is out! We identify the global mechanisms shaping the elemental composition of organisms — and the results overturn long-standing assumptions in ecology.

👇 Thread ↓
doi.org/10.1038/s414...

09.12.2025 14:32 👍 33 🔁 22 💬 3 📌 3
Preview
Towards a broader perspective on marine biodiversity change - Marine Biodiversity Biodiversity decline jeopardizes the foundation of natural ecosystems and human well-being, a concern that prompted major global agreements aiming to bend the curve towards a net positive biodiversity...

More than a year ago researchers from @hifmb.de and @icbm-uol.bsky.social started to write about different perspectives on marine biodiversity change from natural and social science perspectives. This morphed into a review paper that was published online today link.springer.com/article/10.1... 🧪

12.12.2025 15:19 👍 74 🔁 32 💬 1 📌 1
Preview
Meta-analysis-derived estimates of stressor–response associations for riverine organism groups - Nature Ecology & Evolution This global meta-analysis of freshwater stressor–response relationships reveals that the biodiversity loss of five riverine organism groups reflects elevated salinity, oxygen depletion and fine sedime...

Led by Wim Kaijser, we published a global analysis on how five different organism groups respond to seven stressor categories. New paper in Nature Ecology & Evolution. www.nature.com/articles/s41....

11.11.2025 16:16 👍 15 🔁 6 💬 1 📌 0

Our new publication on HOBIT, a software tool for polyploid gene expression analysis. Compared with our previous method HomeoRoq (2014), HOBIT enables direct and higher-quality analysis of complex allohexaploid species such as bread wheat.

28.10.2025 19:32 👍 11 🔁 5 💬 0 📌 0
Scientific productivity gap based on English-language peer-reviewed papers. Shown are the maximum % differences in the number of peer-reviewed papers published by female native English speakers from a high-income country (-45%), female non-native English speakers from a high-income country (-60%), and female non-native English speakers from a lower-middle income country (-70%), compared to male native English speakers from a high-income country (red flag).

Scientific productivity gap based on English-language peer-reviewed papers. Shown are the maximum % differences in the number of peer-reviewed papers published by female native English speakers from a high-income country (-45%), female non-native English speakers from a high-income country (-60%), and female non-native English speakers from a lower-middle income country (-70%), compared to male native English speakers from a high-income country (red flag).

Women, non-native English speakers & those form low-income countries are disadvantaged in science but by how much? We found that women with non-English first languages from low-income countries publish up to 70% fewer in English than their counterparts. 1/5
doi.org/10.1371/jour...
#languagebarriers

19.09.2025 02:45 👍 101 🔁 70 💬 5 📌 2

Thank you for your visiting to Kyoto and your great talk!

26.05.2025 13:58 👍 1 🔁 0 💬 0 📌 0

We have a special seminar (Hybrid) on 23 May (Fri.) 13:15-14:15 (JST)

Prof. Dr. Matthias C. Rillig (Freie Universitaet Berlin, Germany)
"Effects of multiple concurrent global change drivers on soils and ecosystems"

You can get the Zoom link:
kyoto-u-edu.zoom.us/meeting/regi...

20.05.2025 06:53 👍 1 🔁 1 💬 0 📌 1
Science | AAAS Science/AAAS peer-reviewed journals deliver impactful research, daily news, expert commentary, and career resources.

というわけで論文出ました。サイエンス誌のトップページをトクノシマカンアオイとその送粉者の写真が飾っています。ちょっと自分でも信じられないです。
www.science.org

08.05.2025 21:34 👍 29 🔁 10 💬 2 📌 1
Preview
Sexual conflict in resident species can facilitate establishment of a maladapted invader | The American Naturalist: Vol 0, No ja

A paper with Miguel Gómez-Llano and @adamsiepielski.bsky.social entitled "Sexual conflict in resident species can facilitate establishment of a maladapted invader" was published in Am. Nat. @asn-amnat.bsky.social! doi.org/10.1086/736568

08.05.2025 23:29 👍 10 🔁 4 💬 1 📌 0
Preview
Accelerating ecosystem monitoring through computer vision with deep metric learning Significant progress has been made in the application of deep learning models to ecosystem monitoring. Deep learning has opened up new opportunities i…

We published a review paper on the application of deep metric learning, a new deep learning method, to ecosystem monitoring.

www.sciencedirect.com/science/arti...

09.05.2025 00:42 👍 2 🔁 0 💬 0 📌 0
Preview
Rで学ぶ個体群生態学と統計モデリング - 共立出版 岡村 寛 著

おお、岡村さんが本を出版されている。 www.kyoritsu-pub.co.jp/book/b101311... Template Model Builderも扱われているらしい。MCMCではなく最尤法なのに複雑なモデルが謎に収束する例のアレ。点推定したいときや検定したいときに便利。

01.05.2025 05:30 👍 5 🔁 8 💬 1 📌 0
This is figure 1, which shows observations of subsurface microplastics in the ocean.

This is figure 1, which shows observations of subsurface microplastics in the ocean.

The distribution and behaviour of microplastics in the ocean is influenced by their size, with some microplastics potentially entering carbon cycles, according to a study in Nature. go.nature.com/3ScX6Zd 🌊 🧪

01.05.2025 13:12 👍 21 🔁 6 💬 0 📌 0
Post image

Our study ‘The #global #human impact on #biodiversity’ is out in @nature.com: www.nature.com/articles/s41...

🌍🌐🐟🌿🪲

Unprecedented synthesis of >2000 studies led by @francoiskeck.bsky.social shows humans are not only shrinking species numbers—but reshaping entire communities across the planet.
🧵1/5

26.03.2025 21:19 👍 175 🔁 92 💬 1 📌 7
Postdoctoral researcher in Plankton Ecology // University of Oldenburg

We offer a 5-year research position in the #PlanktonEcology lab in Wilhelmshaven. Are you interested in empirically testing ecological concepts? We offer a stimulating scientific environment, experimental facilities & support to establish an independent research profile
uol.de/en/job/postd...

15.04.2025 17:59 👍 60 🔁 76 💬 0 📌 2
Professorship in Theoretical Physical Oceanography // University of Oldenburg

@icbm-uol.bsky.social offers a fully funded professorship in theoretical oceanography. Join a great team of physicists, chemists, and biologists working on the marine environment. Oldenburg is a truly livable city and connected to a range of marine institutes in NW Germany

uol.de/en/job/w2-pr...

03.04.2025 17:47 👍 41 🔁 38 💬 1 📌 0
Preview
StoichLife: A Global Dataset of Plant and Animal Elemental Content - Scientific Data Scientific Data - StoichLife: A Global Dataset of Plant and Animal Elemental Content

I’m thrilled to finally share our new dataset paper-years in the making! This has been an incredible rewarding project, and it was a true pleasure to work with such an amazing team of researchers. Huge thanks to supported by @idiv for the support www.nature.com/articles/s41...

03.04.2025 18:36 👍 80 🔁 33 💬 4 📌 3
Post image

We were honored to celebrate with our Awardees at the ceremony. Congratulations to all!👏

From left to right: Hiroshi Tomimatsu (EiC of Ecological Research @hrstm.bsky.social ), Kohmei Kadowaki, Naoyuki Nakahama @naoyukinkhm.bsky.social, Samuel R. P.-J. Ross

#ESJ72 #ERPaperAward

15.03.2025 12:08 👍 15 🔁 10 💬 0 📌 0
Preview
Bringing traits back into the equation: A roadmap to understand species redistribution In this opinion piece, we explore under which circumstances species traits are expected to explain the rates and directions of species redistributions in response to climate change and discuss how fu...

Nice to see our opinion paper on #species #range #shifts & #species #traits among the 🔟 most downloaded papers in 2024 in #GCB 🌏🌐🧪

@globalchangebio.bsky.social

shorturl.at/j7tQW

05.02.2025 19:50 👍 56 🔁 16 💬 0 📌 0
Preview
Postdoctoral position in biology Halmstad University Work at a University where different perspectives meet! Halmstad University adds value, drives innovation and prepares people and society for the future. Since the beginning in 198

We are announcing a postdoc position in population genetics at Halmstad Uni, Sweden

Project is to investigate population structure of salmonoid fish at different scales, using a variety of methods. One goal is to evaluate eDNA a a tool for population genetics.

hh.varbi.com/en/what:job/...

20.12.2024 07:46 👍 16 🔁 13 💬 0 📌 1

Thank you for share this! could you please add me?

02.12.2024 07:29 👍 1 🔁 0 💬 0 📌 0
Preview
Hydropower impacts on riverine biodiversity - Nature Reviews Earth & Environment Hydropower is a renewable energy source that can contribute to growing energy demands. This Review considers the ecological consequences of hydropower plants on riverine systems and emphasizes the urg...

Hydropower impacts on riverine biodiversity. A paper recently out in Nature Reviews - Earth and Environment with @fengzhihe.bsky.social @scjaehnig.bsky.social jcsvenning.bsky.social and others! A good one-stop shop for understanding the impacts of hydropower dams. www.nature.com/articles/s43...

25.11.2024 01:30 👍 77 🔁 32 💬 1 📌 0

I started an #eDNA starter pack as one didn’t exist yet. Feel free to message me to get your name added. Open to all! go.bsky.app/U2vgV5Q

17.11.2024 07:23 👍 112 🔁 58 💬 61 📌 3

Updated Limnology! starter pack here: go.bsky.app/Qv3DLZ6

23.11.2024 00:25 👍 127 🔁 51 💬 45 📌 7

Let‘s try a #metabarcoding starter pack to nucleate people interested. Welcome molecular #biodiversity monitoring people. Let’s try to keep us posted on updates regarding papers, projects, methods. Happy weekend.☀️#eDNA

go.bsky.app/Qvqgknp

22.11.2024 20:18 👍 39 🔁 22 💬 23 📌 0