Boston Protein Design and Modeling Club

Quick reminder to join us at @danafarber.bsky.social tonight for an awesome talk by Jody Mou!

We're recruiting a Research Associate to join our Bioprocess Development team. This is a wet lab role ideally suited for someone graduating college this spring who is excited to join a team pioneering a new therapeutic modality

Check it out! 👇
www.aiproteins.com/open-positio...

schedule introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...

Spring is arriving in Boston and Jody Mou linkedin.com/in/jody-mou has some fresh new data to share!

Wednesday, March 11th 2026, 7pm EDT in Room 6055, Longwood Center @danafarber.bsky.social

"Computational Design of a Rapid and Orthogonal Self-Labeling Protein Tag for Live-Cell Imaging"

bpdmc.org

AI Proteins Founder & CEO Chris Bahl and Dana-Farber Cancer Institute Investigator Nick Polizzi discuss the current state of protein design and new innovations that are around the corner Both experts in the field, one with an academic view and one from industry, they discuss what can be done today with protein design, new innovations coming in the next year or two, and how they think ...

I had a great time nerding out about protein design with @nickpolizzi.bsky.social, and an enormous thanks to @biotechtv.bsky.social and @massbio.bsky.social for hosting us!

www.biotechtv.com/post/chris-b...

Enjoying a swing through New England. After a fun time at @bpdmc.org, Ethan Eschbach hosted me for a visit with @sandercbio.bsky.social and the @deboramarks.bsky.social lab. I was also thrilled to give a talk at the Thayer School of Engineering at Dartmouth hosted by T. Emme Burgin. What a fun week!

A huge thanks to everyone who packed the house at @mit.edu last night for a rockstar talk by @jeffreyjgray.bsky.social!

Quick reminder to join us at MIT tonight because Jeff Gray is speaking!

I’m looking to hire a research technician for my lab at Harvard & DFCI, who would primarily work in the wet lab expressing and characterizing designed proteins, starting this summer. A great role for a recent college grad looking for an immersive research experience before grad school.

schedule introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...

We've got Jeff Gray (graylab.jhu.edu) coming to present this month!!

Wednesday, February 25th 2026, starting at 7pm EST in Room 181, Building 68, @MIT

"Antibody language models vs. biology; protein docking denoising diffusion models vs. physics"

bpdmc.org

mBER: Controllable de novo antibody design with million-scale experimental screening YouTube video by Boston Protein Design and Modeling Club

Don't worry if you missed the excellent seminar by Mike Nichols and Erik Swanson from @manifoldbio.bsky.social this week because you can check out the recording 👇
youtu.be/u9dznMvcDs4

quick reminder to join us at @mit.edu tonight for our first meeting of 2026!

schedule introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...

Happy New Year! We've got an exciting seminar to kick off 2026

Wednesday, January 21st at 7pm EST
Room 181, Building 68 @mit.edu

speaker: Erik Swanson and Mike Nichols

"mBER: Controllable de novo antibody design with million-scale experimental screening"

bpdmc.org

How AF3-Style Structure Prediction Models Can Be Used for Design: BoltzDesign and Protein Hunter YouTube video by Boston Protein Design and Modeling Club

If you couldn't make it for @yehlincho.bsky.social's rockstar seminar last night, have no fear because you can check out the recording 👇
youtu.be/yCOlC_yj4kc

quick reminder to join us tonight for our final meeting of 2025 - it's going to be a great seminar by @yehlincho.bsky.social that you won't want to miss!

schedule introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...

Join us Wednesday December 10th for an amazing seminar by @yehlincho.bsky.social to cap off 2025. See you at 7pm EST in Room 6055, Longwood Center @danafarber.bsky.social

"How AF3-Style Structure Prediction Models Can Be Used for Protein Design: BoltzDesign and Protein Hunter"

bpdmc.org

Learning millisecond protein dynamics from what is missing in NMR spectra YouTube video by Boston Protein Design and Modeling Club

Don't fret if you weren't in the room this week when @ginaelnesr.bsky.social gave her stellar seminar because you can check out the recording 👇
youtu.be/I-utRMS84E8

quick reminder to join us at DFCI tonight for a spectacular talk by @ginaelnesr.bsky.social!

schedule introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...

We can't wait until Wednesday, November 19th 2025 to arrive because we have @ginaelnesr.bsky.social from @possuhuanglab.bsky.social speaking at 7pm EST in Room 6055, Longwood Center, @danafarber.bsky.social

"Learning millisecond protein dynamics from what is missing in NMR spectra"

bpdmc.org

The secret language of cells — and how to "speak" it What if medicines could "speak" directly to your cells? Protein designer and TED Fellow Chris Bahl introduces a new generation of miniproteins: AI-designed medicines that can deliver detailed instruct...

My new @ted.com talk from the main stage just went live!

go.ted.com/chrisbahl

🧵👇

Empowering Biomedical Discovery with “AI Scientists” YouTube video by Boston Protein Design and Modeling Club

If you missed the amazing seminar by @marinkazitnik.bsky.social last month, the recording is now available! 👇
youtu.be/mkTgopOhSR4

Predicting protein folding stability and aggregation propensity using large-scale experiments YouTube video by Boston Protein Design and Modeling Club

have no fear if you weren't in the packed lecture hall at @mit.edu last week for @grocklin.bsky.social's brilliant seminar - you can check out the recording 👇
youtu.be/KKXe8a_h88c

thanks everyone who packed the house tonight at @mit.edu for an incredible seminar by @grocklin.bsky.social!

quick reminder to come see @grocklin.bsky.social tonight at @mit.edu!

schedule introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...

Join us in Room 181, Building 68 @mit.edu on October 22nd 2025 @ 7pm EDT to see @grocklin.bsky.social present a mind blowing amount of data and learn what becomes possible at this scale

"Predicting protein folding stability and aggregation propensity using large-scale experiments"

bpdmc.org

quick reminder to join us at @danafarber.bsky.social tonight for a spectacular seminar by @marinkazitnik.bsky.social!

schedule introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...

Our September seminar was delayed a couple weeks, but our speaker @marinkazitnik.bsky.social is well worth the wait.

Join us this Wednesday, October 1st 2025 at 7pm EDT in Room 6055, Longwood Center, @danafarber.bsky.social

"Empowering Biomedical Discovery with AI Scientists”

bpdmc.org

Model. Package. Deploy. Repeat: A DevOps Approach to Biomolecular Scalability YouTube video by Boston Protein Design and Modeling Club

If you missed seeing @colby.tuple.xyz's excellent talk back in July, you can now check out the recording 👇 youtu.be/k63Xh-oJMs0

BindCraft: one-shot design of functional protein binders YouTube video by Boston Protein Design and Modeling Club

Have no fear if you weren't in the packed audience this week for @martinpacesa.bsky.social's awesome seminar, because you can check out the recording 👇
youtu.be/qQihl6If9vU

schedule introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...

Fun fact: #bindcraft evolved from a binder design tutorial originally developed for BPDMC!

Come see @martinpacesa.bsky.social tonight at 7pm EDT in Room 181, Building 68, @mit.edu

"BindCraft: one-shot design of functional protein binders"

bpdmc.org

quick reminder to join us tonight at @harvardmed.bsky.social for a great talk by Colby Ford @colby.tuple.xyz