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Joel Nitta

@joelnitta.com

Associate Prof. at Chiba University, Japan. Father. Pteridologist. Outdoor Activist. Nikkei Yonsei. Posts mine. https://www.joelnitta.com

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05.12.2024
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Latest posts by Joel Nitta @joelnitta.com

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植物と昆虫の共生関係保つ未知の「妥協点」 3万超の小花分析し解明:朝日新聞 受粉をしてもらうけど、果実は食べられてしまう――。そんな共生関係にある昆虫と植物の間に未知の「妥協点」があることを、神戸大などの研究チームが突きとめ、国際学術誌に6日、発表した。関係を維持する仕組み…

有料記事がプレゼントされました! 3月7日 08:28まで全文お読みいただけます
植物と昆虫の共生関係保つ未知の「妥協点」 3万超の小花分析し解明:朝日新聞
digital.asahi.com/articles/ASV...

05.03.2026 23:29 👍 15 🔁 12 💬 0 📌 0

Good article, but the framing is wrong. There is not a dearth of interest in taxonomy. There is a scarcity of funding and positions, which is a deliberate choice by funding agencies and institutions. The youth love taxonomy! It's the olds that are failing to meet their passion!

03.03.2026 04:00 👍 301 🔁 85 💬 5 📌 7
The text at the top reads: “APPS Special Issue Call for Papers: Plant genome skimming: Special uses and future potential”. The image beneath the title shows a phylogenetic tree on the left side, with images illustrating each genus in the tree on the right. Images from top to bottom are Hypogymnia inactiva, Imshaugia aleurites, Cladonia asahinae, Leptogium sp., Graphis plumierae, Opegrapha niveoatra. The text beneath the image reads: “Proposal deadline March 16, 2026”. The Applications in Plant Sciences logo is in the bottom left corner, and a QR code is in the bottom right corner.

The text at the top reads: “APPS Special Issue Call for Papers: Plant genome skimming: Special uses and future potential”. The image beneath the title shows a phylogenetic tree on the left side, with images illustrating each genus in the tree on the right. Images from top to bottom are Hypogymnia inactiva, Imshaugia aleurites, Cladonia asahinae, Leptogium sp., Graphis plumierae, Opegrapha niveoatra. The text beneath the image reads: “Proposal deadline March 16, 2026”. The Applications in Plant Sciences logo is in the bottom left corner, and a QR code is in the bottom right corner.

DEADLINE IN 2 WEEKS
🌿SPECIAL ISSUE CALL FOR PAPERS🌿

#AppsPlantSci invites proposals for “Plant genome skimming: Special uses and future potential,” led by Quentin Cronk, Nolan Kane & Kyle Keepers.

More info at botany.org/home/publica...

#botany #phylogenetics #genomics #plantscience

02.03.2026 17:31 👍 6 🔁 3 💬 0 📌 0
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rambaut/figtree Automatically exported from code.google.com/p/figtree - rambaut/figtree

The first version of FigTree was released nearly 20 years ago and it is still widely used (including by me). But there are currently 85 issues on the GitHub repo (github.com/rambaut/figt...) and some of them I don’t really like the look of.

28.02.2026 19:01 👍 142 🔁 42 💬 4 📌 2

This is wonderful! Congratulations!

27.02.2026 12:53 👍 1 🔁 0 💬 0 📌 0

ah that warm fuzzy feeling when you get the monthly email from some stupid hotel or restaurant that you went to ONE time and never plan to go back to again ever but are stuck on their mailing list for life 💢

26.02.2026 06:11 👍 1 🔁 0 💬 0 📌 0
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Estimating global bee species richness and taxonomic gaps - Nature Communications Bees are crucial for the maintenance of healthy ecosystems, yet rigorous estimates of their species’ richness are lacking. This study estimates taxonomic gaps for bees around the world and provides a ...

New paper alert! "Estimating global bee species richness and taxonomic gaps" suggests that we have thousands of bee species left to describe and decades of taxonomic work ahead of us. We also provide the methods needed to apply more broadly :)
doi.org/10.1038/s414...

25.02.2026 00:55 👍 41 🔁 20 💬 1 📌 2
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Quarto Wizard v2.2.0 is out for VS Code and Positron.

New: schema-aware authoring (completions, hover, validation for Quarto extensions), extension snippets, compatibility badges, and brand support.

m.canouil.dev/quarto-wizard

#Quarto #VSCode #PositronIDE #authoring

25.02.2026 09:26 👍 6 🔁 5 💬 0 📌 0
Post image Post image Post image Post image

my local park is full of hundreds of snow sculptures and someone has been adding museum labels

24.02.2026 19:42 👍 8141 🔁 2120 💬 97 📌 265

What to learn more about the enigmatic organism Prototaxites?? Have a read of our new Quick Guide in @currentbiology.bsky.social
It includes another great palaeo-reconstruction of the Rhynie ecosystem from @matt-humpage.bsky.social

24.02.2026 08:02 👍 20 🔁 9 💬 1 📌 0

#rstats 4.5.3 "Reassured Reassurer" scheduled for March 11. Full schedule on developer.r-project.org (or the svn if you're impatient.) This should be the wrap-up release for the 4.5 series.

23.02.2026 14:12 👍 28 🔁 17 💬 0 📌 0
The text at the top reads: “APPS Special Issue Call for Papers: Plant genome skimming: Special uses and future potential”. The image shows a phylogenetic tree on the left side, with images illustrating each genus in the tree on the right. Images from top to bottom are Hypogymnia inactiva, Imshaugia aleurites, Cladonia asahinae, Leptogium sp., Graphis plumierae, Opegrapha niveoatra. A QR code is in the bottom left corner. The text at the bottom reads: “Proposal deadline March 16, 2026”.

The text at the top reads: “APPS Special Issue Call for Papers: Plant genome skimming: Special uses and future potential”. The image shows a phylogenetic tree on the left side, with images illustrating each genus in the tree on the right. Images from top to bottom are Hypogymnia inactiva, Imshaugia aleurites, Cladonia asahinae, Leptogium sp., Graphis plumierae, Opegrapha niveoatra. A QR code is in the bottom left corner. The text at the bottom reads: “Proposal deadline March 16, 2026”.

DEADLINE APPROACHING!
🌿SPECIAL ISSUE CALL FOR PAPERS🌿

#AppsPlantSci invites proposals for “Plant genome skimming: Special uses and future potential,” led by Quentin Cronk, Nolan Kane & Kyle Keepers.

More info at botany.org/home/publica...

#botany #phylogenetics #genomics #plantscience

23.02.2026 17:04 👍 3 🔁 1 💬 0 📌 0
PNAS Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...

New paper just out deciphering the global species–area relationship for plants with @biogeokreft.bsky.social @patrickweigelt.bsky.social and others in @pnas.org

Across islands area alone explains 66% of variation in richness best described by a classic power-law model

www.pnas.org/doi/10.1073/...

17.02.2026 22:52 👍 18 🔁 8 💬 0 📌 0

IIRC it was already a lottery?

20.02.2026 23:35 👍 0 🔁 0 💬 0 📌 0
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Issue 2026-W08 Highlights A glimpse into the R Consortium Submissions Working Group's recent successes and future work, and a new way to view those nested lists from a familiar face…

Episode 221 of the R Weekly Highlights Podcast is out! serve.podhome.fm/episodepage/...

📰 Submissions WG successes and new plans @rconsortium.bsky.social
🕸️ Viewing nested lists @yihui.org

h/t @mike-thomas.bsky.social & @batoolmm.bsky.social 🙏

#rstats #databs

20.02.2026 12:12 👍 8 🔁 3 💬 0 📌 0

Thanks, this looks great! Will definitely give it a try for my next slide deck

20.02.2026 11:05 👍 1 🔁 0 💬 0 📌 0

+1 to this! I love my Quarto slides but I shudder thinking about how much time I’ve sunk into trying to get text / images in the place I want on a slide

19.02.2026 23:43 👍 1 🔁 0 💬 0 📌 0
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ggannotate: interactively add annotations to your {ggplot2} plots by pointing and clicking github.com/MattCowgill/... #Rstats

19.02.2026 10:49 👍 33 🔁 9 💬 2 📌 0

They just don’t get it - they’re trying to replace the part of our job we like the *most*.

If they could make an AI tool to vibe-complete travel, reimbursement, and annual reporting paperwork they would make a fucking FORTUNE

27.01.2026 23:46 👍 135 🔁 21 💬 2 📌 3
Student Research Award <p>The ASN Student Research Awards support research by student members that advances the goals of the society: the conceptual unification of ecology, evolution, and behavior. Each award consists of a ...

If you're an #EcoEvo #PhD candidate anywhere in the world looking for project funding, consider applying for the @asn-amnat.bsky.social Student Research Award.

Ten proposals for $2k in research funds will be awarded. Due 13 March 2026.

Please share widely! 🧪 #grants #ecology #evolution #behavior

18.02.2026 05:23 👍 47 🔁 56 💬 1 📌 0
A crochet project featuring several stitch markers (beginning of a Snorlax from Lee Sartori's Pokemon crochet book)

A crochet project featuring several stitch markers (beginning of a Snorlax from Lee Sartori's Pokemon crochet book)

Screenshot of commits on saperlipopette's GitHub repo where each type of commit gets a colored label, e.g. 'docs' or 'feature'

Screenshot of commits on saperlipopette's GitHub repo where each type of commit gets a colored label, e.g. 'docs' or 'feature'

New post: "Git commits: please mark your stitches!"

In which I share a crochet analogy for Git commits… 🧶

masalmon.eu/2026/02/15/s...

17.02.2026 10:40 👍 3 🔁 1 💬 0 📌 0
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LinneSys: Systematics Research Fund LinneSys: Systematics Research Fund The Councils of The Linnean Society of London and The Systematics Association jointly administer this fund for the benefit of systematics research. The Fund has …

The 2026 LinneSys call is open!

Looking for a small grant for systematics work? Check us out! systass.org/linnesys/

All you need is to be a member of the @systassn.bsky.social or the @linneansociety.bsky.social

Caveat, legally, we cannot fund anyone in a country listed here: tinyurl.com/wemwtfrz

16.02.2026 10:53 👍 14 🔁 18 💬 1 📌 1

This looks great, thanks for sharing. I’m interested in developing a course like this but at a much more introductory level.

17.02.2026 02:03 👍 1 🔁 0 💬 0 📌 0
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So yeah, already fourth iteration of my Data Analysis with AI course. gabors-data-analysis.com/ai-course/ All open source. I have an intro overview of AI and its use in data. gabors-data-analysis.com/courses/da-w...

16.02.2026 22:32 👍 22 🔁 9 💬 2 📌 1
rOpenSci Nuestro programa busca identificar, reconocer y premiar a las personas líderes en una comunidad de ciencia abierta, ingeniería de software de investigación y la comunidad de programación R.

Aplica antes del 20/02: champions-program.ropensci.org!

El Programa está dirigido especialmente a personas que:
🌎 Son de América Latina o trabajan allí
🧠 Tienen experiencia en #RStats y quieren aprender más
🗣️ Se sienten cómodas comunicándose en español
🤝 Quieren fortalecer sus comunidades locales

16.02.2026 03:33 👍 3 🔁 4 💬 0 📌 0
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Benchmarking AI IQ & Data Science Agents (Feb 2026) Discover the latest in AI for data science. This edition explores the BASIS benchmark for AI IQ, the rise of coding agents like Databot for R and Python, and organizational values in the age of LLMs. ...

🗞️ Here's the latest edition of the Posit AI newsletter, your biweekly roundup of AI news from Posit & beyond.

This week's edition includes:

posit::conf(2026) call for talks
A step change in coding agents’ abilities
METR’s time horizon eval

& more!

📬 Read the newsletter: posit.co/blog/2026-02...

13.02.2026 14:42 👍 4 🔁 1 💬 1 📌 0
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An AI Agent Published a Hit Piece on Me Summary: An AI agent of unknown ownership autonomously wrote and published a personalized hit piece about me after I rejected its code, attempting to damage my reputation and shame me into acceptin…

Letting "AI agents" roam should be illegal, and any harm they cause should cause fines high enough to bankrupt anyone.

theshamblog.com/an-ai-agent-...

13.02.2026 08:34 👍 15 🔁 7 💬 2 📌 1

Wow that is crazy and should make anyone involved in open source concerned. Unfortunately this is surely moving way too fast for any legislation to keep up.

14.02.2026 00:31 👍 1 🔁 0 💬 0 📌 0
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Package index

New Git exercises in the #RStats package {saperlipopette}, about using the history!

❌ I want to find which commit deleted a file/line!

🏷️ On ancestry references

🤨 I want to find who added a specific line!

📂 What did the project looked like at a certain version?

docs.ropensci.org/saperlipopet...

13.02.2026 10:21 👍 25 🔁 2 💬 0 📌 0

This is Elmo speaking, right?

13.02.2026 01:00 👍 0 🔁 0 💬 0 📌 0