New website (see link from main post). It shows in the left column the BioHackrXiv "BHX" logo with short explanation what BHX is. On the right is the new content. Users no longer have to select a BioHackathon, but all that information is now extracted from the paper.md itself. The "Getting Started" box explains the process. Under this box is now only the two options to provide the paper, Option 1 being the repository URL, and the Option 2 is to upload a .zip file.

our preview website has been revamped: https://preview.biohackrxiv.org/

#biohackrxiv #preprint #biohackathon

Screenshot of the "Number of articles with CiTO-annotated citations by year" panel, showing articles with explicit CiTO annotations (so, as part of the articles themselves!), first in 2010 (you should know that by now), and then Journal of Cheminformatics preprints since 2020 (3, 8, 5, 4, 2, 2, yeah, not increasing) and BioHackrXiv since 2022 (2, 11, 13, 10). With BioHackathon Europe and BioHackathon Germany still taking place, we should be able to set a new high.

Another good year for explicit CiTO annotations! https://scholia.toolforge.org/cito/

Thanks to all Journal of Cheminformatics and BioHackrXiv authors!!!

Looking forward to the #BH25EU and #BH25DE preprints with CiTO annotations! Help us set a new record ;) […]

[Original post on mastodon.social]

did you know you can follow new preprints in #BioHackRXiv?

RSS feed: https://index.biohackrxiv.org//feed.xml

JSON feed: https://index.biohackrxiv.org//feed.json

#preprint #biology

OpenAlex (@OpenAlex@mastodon.social) 229 Posts, 0 Following, 1.33K Followers · OpenAlex is an open index of the global research system. Made with ❤️ by @OurResearch_org.

hi @OpenAlex, I was just looking at https://openalex.org/works/w3131971476 and do not see where it was published. It was published in #BioHackrXiv but do not see that anywhere. it's a preprint server, so, I was wondering how to get BioHackrXiv known to OpenAlex? cc @pjotrprins

Andra Waagmeester on LinkedIn: Barcelona 2025 #SWAT4HCLS 2025 kicks off on February 24th! Expect a full week of tutorials, conference talks, and the #Biohackathon! 📅 The Biohackathon will be the last day…

#SWAT4HCLS starts Feb 24 At the #Biohackathon, I’d like to explore how #Pandoc, #Myst, #JupyterBook can generate RDF and SPARQL-driven reports while also supporting ontology maintenance and hosting.
Inspired by #Biohackrxiv, which uses GitHub & Pandoc.
www.linkedin.com/posts/andra-...

the two most cited #BioHackrXiv papers are:

- "ELIXIR Software Management Plan for Life Sciences", by Renato Alves et al., 2021, https://doi.org/10.37044/osf.io/k8znb
- "Connecting molecular sequences to their voucher specimens", by Quentin Groom et al., 2021, https://doi.org/10.37044/osf.io/93qf4

Screenshot of the BioHackrXiv page listing the 100 preprints, showing the logo made of the letters B, H, and X (a bit like a wooden block B, and the H and X made of shelfs), a search bar, the text "100 results" and then the titles of the three latest preprints: - "BioHackGermany24 report: User-friendly ISA-based metadata annotation of life science experiments with ISA Wizard", by Patrick König and Sebastian Beier, on Feb 7 - "BioHackJP24 report: Running a WikiBlitz", by Andra Waagmeester , Shuya Ikeda , Yasunori Yamamoto , Erick Antezana , Núria Queralt Rosinach , and 1 more, on Feb 5 - "BioHackEU24 report: Bioschemas for Mortals", by Nick Juty , Phil Reed , and Helena Schnitzer, on Feb 2

congrats to #BioHackrXiv with their 100th preprint! osf.io/preprints/biohackrxiv/di...

#openscience #hackathon #BioHackEU24 #BioHackJP24 #BioHackGermany24

nice to see the first #BioHackRxiv 2025 paper with Citation Typing Ontology (CiTO) annotation: "Enhancing multi-omic analyses through a federated microbiome analysis service" https://scholia.toolforge.org/work/Q131798238 https://doi.org/10.37044/osf.io/3x274

BioHackRxiv […]

Histogram of the "Number of articles with CiTO-annotated citations by year", with two articles in 2000, 1 in 2003 and 2010, 6 in 2020, 10 in 2021, 12 in 2022, 19 in 2023, and 22 in 2024. In this year, only two article in the Journal of Cheminformatics (end of the pilot), but compensatied by 13 reports/preprints in BioHackRxiv and 7 nanopublications.

thanks to #BioHackRxiv and @nanopub the number of CiTO-annotation of citations intentions continue to grow :) https://scholia.toolforge.org/cito/#articles-by-year

#publishing

two new #BioHackRXiv preprints with #CiTO annotations :) https://scholia.toolforge.org/cito/

(Actually, there is a third one, but this only uses cito:cites which I currently do not include in #Wikidata)