Overcoming limitations to customize DeepVariant for domesticated animals with TrioTrain. #GeneticVariants #DeepVariant #NonHumanSpecies #Bioinformatics @genomeresearch.bsky.social‬ 🧬 🖥️
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Release DeepVariant 1.8.0 · google/deepvariant In this release: Small model integration: Speed increased by ~1.7x (40% runtime reduction) for WGS, PacBio, and ONT by introduction of additional small model. The small model identifies easy-to-...

Ok so this #deepvariant caller update from #google is BIG.
github.com/google/deepv...

- 1.6x time reduction (40% increase ??)
- Pangenome integration
- New model and improvements over previously model

Excited to try this new update 🧬💻

#bioinformatics #wgs #ngs #variantcalling

Last time I did genetics … GATK was new and the best thing ever. I don’t feel that’s the case anymore, especially with non-model organisms. It’s lacking in parallelism, and I don’t have gold standard sets. So, the new rage is #DeepVariant … but my new favorite is bwa-meme, and containers