Discover the latest updates and project status of OpenCRAVAT by exploring the roadmap available on GitHub. Stay informed about the progress and developments by visiting this link: [OpenCRAVAT Roadmap](github.com/orgs/Karchin...). #annotator #opencravat #bioinformatics #opensource #genomics 🧬 🧪 🖥️
; (3) run non-sensitive analyses locally and scale compute in cloud for bulk jobs; (4) automate QC and reporting templates; (5) train non-programmer staff using the GUI. #annotator #opencravat #bioinformatics #opensource #genomics
Stuck with a three-month VCF backlog? Try these five rapid changes to cut turnaround time in half. (1) prioritize with calibrated predictors; (2) use OpenCRAVAT modular annotators to remove tool fragmentation#annotator #opencravat #bioinformatics #opensource #genomics🧬 🖥️ 🧪
We are planning to launch a new collection of Jupyter notebooks and would love to know if you're interested. If so, please share topics or features you'd like included. Your feedback will help us tailor these notebooks to your needs and preferences.#annotator #opencravat #opensource 🧬 🧪 🖥️
Introducing our latest offering: the Calibrated Classification Package for clinical interpretation of variant effect predictor scores. This innovative package aids users in applying ACMG/AMP variant interpretation guidelines.#annotator #opencravat #bioinformatics #opensource #genomics 🧬 🧪 🖥️
Would you be interested in organizing or speaking at meetups, writing blog posts, or promoting the project?
Are you part of any communities or organizations where you could share our project?
#annotator #opencravat #bioinformatics #opensource #genomics
Would you be open to helping improve documentation or writing user guides?
Do you have skills in UI/UX design, and would you be interested in helping us improve the user interface?
#annotator #opencravat #bioinformatics #opensource #genomics
Would you be willing to review pull requests or help triage GitHub issues?
Can you help test new features or provide feedback on pre-release versions?
Would you be interested in setting up automated test cases or improving test coverage?
#annotator #opencravat #bioinformatics #opensource #genomics
🧬 Curious about your genome?
Join our free webinar on OpenCRAVAT to explore and annotate your own data!
📅 July 10 – 1 PM EDT
🎙️ Baker & Karchin (JHU)
🔗 tinyurl.com/3ur6vv35
#Genomics #Bioinformatics #OpenScience
#annotator #opencravat #bioinformatics #opensource #webinar #genomes 🖥🧪
Discover the power of OpenCRAVAT's cutting-edge annotation features that ensure seamless collaboration among users. Its intuitive design makes it easy for everyone to navigate, while enhancing productivity across the board.#annotator #opencravat #bioinformatics #opensource #genomics 🖥️ 🧬
Do you have research goals for 2025!? We'd love to hear them! #annotation #OpenCRAVAT #2025 🧪🖥
🌐 On the 10th day of #OpenCRAVAT, my workflow gave to me…
✨ Powerful API Capabilities!
Integrate OpenCRAVAT into pipelines: submit jobs, check statuses, and fetch custom reports programmatically.
Explore the API docs: https://buff.ly/4g8lMfP
#12DaysofOpenCRAVAT #Genomics
☁️ Day 9 of #OpenCRAVAT: Run on the Cloud!
No hardware limits, no delays—just efficient genomic analysis anywhere. Learn how to set up OpenCRAVAT on the cloud today.
🔗Cloud Usage: https://buff.ly/3BjGavq
#12DaysofOpenCRAVAT #CloudComputing 🖥️ 🧬 #Genomics #Variants
🌟 On the 6th day of #OpenCRAVAT, my database gave to me…Six Gene-Level Insights!
Which insight is most valuable for your research? CHASMplus, REVEL, PolyPhen-2, @gnomad-project.bsky.social, ClinVar, or COSMIC?
Explore OpenCRAVAT at opencravat.org
#Genomics #VariantAnalysis #OpenCRAVAT 🧬 🖥️
On the 5th day of #OpenCRAVAT, my platform gave to me…
✨ Five Tips for New Users!
New to OpenCRAVAT? Check out the links in this thread. Got questions? Comment below!
#12DaysofOpenCRAVAT #Genomics #OpenData #Variants #Annotation
❄️ On the 4th day of #OpenCRAVAT, my workflow gave to me…
Four Annotation Sources!
Discover how gnomAD4, dbSNP, ClinVar, and COSMIC make your variant analysis powerful. Which do you rely on most?
Link to full list of annotators: docs.opencravat.org/en/latest/
✨ On the 3rd day of #OpenCRAVAT, my tools gave to me…
🎄 Three Custom Report Options!
Choose from TXT, Excel, or Sqlite outputs to fit your workflow. Which report type is your favorite? Reply below!
🔗https://buff.ly/3VlpryC
🔗https://buff.ly/4iewYJj
#12DaysofOpenCRAVAT #Genomics #VariantAnalysis
🎁 On the 2nd day of #OpenCRAVAT, my software gave to me…
✨ Two New Example Inputs!
Test OpenCRAVAT with hgvs and dbsnp inputs. Perfect for trying the software before running your data!
🔗https://buff.ly/3BapIgP & https://buff.ly/49l5yNJ
#12DaysofOpenCRAVAT #VariantAnnotation
🎄 On the 1st day of #OpenCRAVAT, my analysis gave to me…
✨ A Single Variant Tool for Free!
Quickly annotate any genomic variant right from the new OpenCRAVAT website. Try it now and simplify your workflows!
www.opencravat.org run.opencravat.org/webapps/vari...
Exciting news! OpenCRAVAT has a brand-new website AND logo. Check it out at opencravat.org.
🧬 Explore our Single Variant Tool directly on the landing page—annotate a single variant with ease and see how OpenCRAVAT simplifies genomic analysis! 🚀
#Genomics #VariantAnalysis #OpenCRAVAT
OpenCRAVAT v2.9.0 has landed! 🧬
✅ Added hgvs and dbsnp example inputs
✅ Better Single Variant Report inputs
✅ Improved input handling with the oc new example-input command
#Genomics #OpenCRAVAT #Bioinformatics
Please visit us at ISMB 2024! We are poster 449. iscb.junolive.co/ISMB24/live/...
#ISMB #Opencravat #Annotator #OpenSource #Genomics
Check out our HGVS Input Examples and let us know what you think on our github discussion board!
github.com/KarchinLab/o...
#Opencravat #variants #HGVS #bioinformatics
. Check out the HGVS recommendations for detailed guidance: "HGVS Recommendations for the Description of Sequence Variants: 2016 Update" den Dunnen JT, Dalgleish R, Maglott DR, Hart RK, Greenblatt MS, McGowan-Jordan J, et al. Hum Mutat. 2016. #OpenCravat #HGVS #Variants
Whether you're a seasoned geneticist or new to sequence variant analysis, this update will help you get the most out of Open Cravat. You can use it for batch jobs and single variant reports! Visit run.opencravat.org to try this new feature. #OpenCravat #HGVS
High-Throughput Annotation: OpenCRAVAT version 2.6.0 released!
If you don't have pip, check out windows and mac installers. See how at open-cravat.readthedocs.io/en/latest/Up...
#OpenCRAVAT #VCF #HighThroughput #Genetics #Bioinformatics
opencravat.org
High-Throughput Annotation: OpenCRAVAT version 2.6.0 released!
OpenCRAVAT just got a major upgrade with a brand new high-throughput workflow :vcfanno.
#OpenCRAVAT #VCF #HighThroughput #Genetics #Bioinformatics
opencravat.org
