Registration is now open for the Cochin #QuPath training course for the manipulation of Fluo or color pyramid images, #histology or #microscopy, with the application of #deeplearning
April 14, 2026
April 17, 2026
institutcochin.fr/formation-co...

@institutcochin.bsky.social
@upcite.bsky.social

#ImageAnalysis #GelElectrophoresis #OpenScience #ReproducibleResearch #GalaxyProject #QuPath #Bioimaging #LifeSciences #OpenSourceTools #ScienceEducation #DataAnalysis #ResearchTools (2/2)

#Mifobio2025 come and discover #InstanSeg at our A-85 : rapid segmentation of nuclei/cells on #Multiplexed images : application of pre-trained models on #QuPath, customization via #Jupyter Notebook,
📆Saturday at 9 p.m.
Thursday at 4:15 p.m.
#AI
@gdrimabio.bsky.social
@institutcochin.bsky.social

#QuPath + Imglib2 and #BDV ❤️

Promising start!

(Mainly Léo and Pete's work github.com/qupath/qupat... + a small addition)

Registration is now open for the Cochin #QuPath training course for the manipulation of Fluo or color pyramid images, #histology or #microscopy, with the application of #deeplearning
November 5, 2025
November 12, 2025
@institutcochin.bsky.social
institutcochin.fr/formation-co...

GitHub - sbalci/spider-qupath Contribute to sbalci/spider-qupath development by creating an account on GitHub.

Using #QuPath with HISTAI SPIDER Colorectal Module
Repository github.com/sbalci/spide...
Video www.youtube.com/watch?v=8tLO...
#pathsky #digitalpathology #pathology #pathologist

Used QuPath before and hit a challenge?👇
Our Call for Help is open! If you joined our May course or know the basics, send us your image+analysis problem.
Basic QuPath knowledge required
Scan the QR code in the post to submit!!
#PPBI #QuPath #ImageAnalysis #Microscopy #BioimageAnalysis #OpenScience

Turn images into insights! Join VIB's imaging workshops in Antwerp:
🔬🖥️ Fiji Image Processing (18/06): Build your first analysis pipeline
🔬🖥️ #QuPath Bioimage Analysis (19/06): Segment, classify & script your images
For life scientists ready to level up.
Details 👉 vibbio.tech/43sI2fp #bioimaging

QuPath & histai SPIDER Colorectal Model YouTube video by SERDAR BALCI

My attempt to use #histai #SPIDER #Colorectal #Model within #QuPath with help of #Anthropic #Claude #pathology #pathologist #pathsky
www.youtube.com/watch?v=8tLO...

3rd day of the #NEUBIASpasteur2025 with a introduction lecture to OMICS by Florian Muller, followed by a full day of #qupath by Thierry Pecot and #ome-zarr / #dask by @m-albert.bsky.social

Day 3 for the ECI track at #neubiaspasteur2025!
Photo: Thierry Pécot introducing the wonders of #QuPath to very attentive students

GitHub - mattaq31/GelGenie: Open-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for training/running models and a QuPath GU... Open-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for training/running models and a QuPath GUI extension are available...

Download it now (available for Mac, Windows or Linux) from here: github.com/mattaq31/Gel...

A model usable within ImageJ is now also available on BioImage.IO (docs here: github.com/mattaq31/Gel...)

#machinelearning #AI #segmentation #imageanalysis #gelelectrophoresis #gelquantification #qupath

Hehe, finally had time to revamp a bit Warpy. It's now possible to concatenate a series of transformed sections in a 3D stack for #QuPath. Computed on the fly and with reasonable performance (image and transform field caching).

📢 Learn #QuPath across 🇵🇹!

The 4th edition of our Intro to QuPath course is happening:
🗓️ May 21–23, 2025
📍 PPBI Nodes across Portugal
🔹 Register by May 11
📝 Info & registration: see comments

QuPath for bioimage analysis Please join us for the Virtual Pub on Friday, March 14 at 13:00 CET. We welcome Pete Bankhead, University of Edinburgh, for a talk entitled, “Image analysis with QPath.”

It's TODAY! Join us for the Virtual Pub/Image Data Community Days lecture with Pete Bankhead, University of Edinburgh, to explore Image analysis with #QuPath.
All are welcome!
Starts at 🕐 13:00 CEST
Don't forget to register here🔽

Registration is now open for the Cochin #QuPath training course for the manipulation of Fluo or color pyramid images, #histology or #microscopy, with the application of #deeplearning
April 30, 2025
May 07, 2025
@institutcochin.bsky.social
institutcochin.fr/formation-co...

#Qupath 's cell counter display is so cool I want it as artwork for my next album.

So what we do today?

Count tumor infiltrating lymphocyets (TILs). Like every Thursday...

#Bioimage #imageanalysis #biomed #qupath

So proud of grad student Lauren Yunker for applying new methods of image analysis to segmenting protein casts in kidney sections. We worked together to get her started and it was fun to see her transition from manually tracing in #imagej to using #QuPath

journals.physiology.org/doi/abs/10.1...