Check our yet another "Protocol for automated analysis of biological images using #Python code" sciencedirect.com/science/arti...
-Steps for the analysis of confocal images through Python
-Guidance on the usage of machine learning for #cellsegmentation
-Troubleshooting of common issues

Practical guidelines for cell segmentation models under optical aberrations in microscopy. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2024.09.002

🤖 How resilient are deep learning models to real-world imperfections in microscopy?

🔗 Practical guidelines for cell segmentation models under optical aberrations in microscopy, DOI: doi.org/10.1016/j.cs...

📚 CSBJ Quantum Biology and Biophotonics: www.csbj.org/qbio

#CellSegmentation #Microscopy

Day 1 of #AGBT25, ft. exciting @10xgenomics.bsky.social announcements!

Later this year, #Flex coming out with 96 barcodes then eventually scaling up to 384, #Xenium #protein capabilities, and #VisiumHD #cellsegmentation.... #DukeMGC can't decide which we're most excited about! 🧬🧠💻

Exploring the Impact of Variability in Cell Segmentation and Tracking Approaches While manual segmentation and tracking of cells from microscopy images remain common practices in biological studies, our work demonstrates the inter- and intra-user variability that can arise from t...

Want to find out more? Take a look at our latest publication here: doi.org/10.1002/jemt...

This was a really fun one to write and revealed some exciting results! 🔬(3/3)

#imageanalysis #bioimageanalysis #microscopy #cellsegmentation #celltracking

STCellbin
Use Nuclei+Cell Membrane/Wall stains to improve #CellSegmentation & single-cell-resolved #SpatialTranscriptomics

Tailored for #StereoSeq, but likely implementable for other ST methods

#GigaByteJournal 2024
gigabytejournal.com/articles/110

#Baysor

#CellSegmentation for 2D 3D image-based #SpatialTranscriptomics

Based on Transcript composition #MarkovRandomField
-/+Stain image #PriorSegmentationConfidence

Work with #MERFISH #smFISH #STARmap
⏫Detection of vascular cells

#NatureBiotech 2022
www.nature.com/articles/s41...