We’ve had an amazing week learning about #SpatialTranscriptomics with Tancredi Pentimalli and this fantastic group of participants!

It was a very dynamic & interactive learning environment, & we hope everyone is leaving the course with plenty of new knowledge & ideas to apply in their research. 🚀📊

Dr. Sanja Vickovic in front of imaging technology.

Envision the future of #SpatialTranscriptomics and #DigitalPathology tools in a new article spotlighting IICD Core Member Sanja Vicković and her lab> bit.ly/40o5jOA #CancerResearch #BiomedicalEngineering #Multiomics #ColorectalCancer

SpatioTemporal Omics eneRgIES

STORIES
Learning Waddington differentiation potential (FGW loss) from #SpatialTranscriptomics (across time points) using Optimal Transport

Tunable weights of spatial information

Compute both pseudotime & velocity

#NatMethods 2025
www.nature.com/articles/s41...

We’ve kicked off our 5-day journey on #SpatialTranscriptomics with Tancredi Pentimalli and an amazing international group of attendees!

Excited for an inspiring week of learning and hands-on sessions ahead!

@bioconductor.bsky.social
#SingleCell #Genomics #Bioinformatics #RStats #SpatialOmics

Webinar at EMBL-EBI: Integrating single-cell and spatial transcriptomics to map the rules of neurological conditions. 18 March 2026. 14:30-15:30 GMT. Speaker (with headshot): Koen Rademaker, Wellcome Sanger Institute

Join us next week for the fifth #webinar in our
#SpatialTranscriptomics series: Koen Rademaker will present the talk "Integrating single-cell and spatial transcriptomics to map the rules of neurological conditions".

Registration is free but essential: www.ebi.ac.uk/training/eve...

🖥️🧬

The framework reveals hidden tissue heterogeneity and is a powerful approach to high-resolution analysis in tumor and brain research.

#PKUResearch #PekingUniversity #AcademicSky #SpatialTranscriptomics #Genomics #Bioinformatics #ComputationalBiology @natcellbio.nature.com

#SpatialTranscriptomics

Optimizing Xenium In Situ data utility by quality assessment & best-practice analysis workflows

Must-read for Xenium user🔥

👉Segmentation
👉Spatially variable feature selection
👉Imputation
👉Spatial domain identification

#NatMethods 2025
www.nature.com/articles/s41...

Spatial transcriptomics is transforming tissue biology 🔬

Free webinar: 📅 March 31, 2026 | 10:00 AM BST

Learn fundamentals of 10x Genomics Visium HD, applications, sample prep best practices & data analysis.

Register here: tinyurl.com/zu8n4zr3

#SpatialTranscriptomics #Genomics #NGS #10xGenomics

Does your study require #spatialtranscriptomics?
We have a sample report available demonstrating how #bioinformatics can help!
Request the report today at:
www.fiosgenomics.com/spatial-transcriptomic-a...

Webinar at EMBL-EBI. Interactive visualisation of spatial transcriptomic data. 11 March 2026, 14:30-15:30 GMT. Speaker (with headshot): Michele Bortolomeazzi, DKFZ

Join us next week for the fourth #webinar in our
#SpatialTranscriptomics series, where we will talk about how to visualise spatial transcriptomics data using napari and Vitessce.

Registration is free but essential: www.ebi.ac.uk/training/eve...

🖥️🧬

🚨3-year Postdoc Position @halloulab.bsky.social (Kennedy Institute, Oxford) - on Spatial Biology & Bioinformatics of Fibrosis🚨

An exciting project combining #SpatialTranscriptomics & #Mechanobiology👇:

shorturl.at/LLS5r

Deadline: 16 March - Please RT 📢!

@kiroxford.bsky.social @ox.ac.uk

Postdoc researcher Sonia Fonseca in the single-cell labs at EI demonstrating our Vizgen MERSCOPE spatial platform

#Spatialtranscriptomics is a powerful tool to analyse gene expression at a cellular level, with increasing studies in multiple systems.

But traditional histology techniques can focus on the morphology of a sample, often without consideration of maintaining high-quality RNA for secondary analysis.

Innovations in spatial imaging could unlock higher wheat yields Scientists at the Earlham Institute and the John Innes Centre are pioneering powerful single-cell visualisation techniques that could unlock higher yields of global wheat.

And earlier this year, scientists from Earlham Institute and @johninnescentre.bsky.social published a study using #spatialtranscriptomics to map the expression of 200 genes across four stages of wheat development, revealing new insights as to how the wheat spike forms.

#spatial #genomics

Spatiotemporal analysis of human intestinal development at single-cell resolution Development of the human intestine is not well understood. Here, we link single-cell RNA sequencing and spatial transcriptomics to characterize intest…

📄 Key paper on single cell RNA sequencing and spatial transcriptomics in fetal intestine:
www.sciencedirect.com/science/arti...

#WIMMSpotlight #WIMMCommunity #PaediatricResearch #IntestinalImmunology #SpatialTranscriptomics #SingleCellGenomics #RareDiseaseResearch #MRCWIMM

Earlier this month at CSI Science Exchange, we welcomed Dr. Norbert Tay for a research sharing session titled “Understanding Merkel Cell Carcinoma with Spatial Transcriptomics.” He is a Postdoctoral Fellow at @uofmichigan.bsky.social.

#cancerresearch #spatialtranscriptomics #merkelcellcarcinoma

Next #DukeSCIRIP seminar is March 4th 12-1pm online or in MSRBIII!

Join us for talks on ongoing research in #SpatialTranscriptomics and #SingleCell at Duke, this month from the Ji lab and #DukeMGC🧬

For more info or to join virtually, please visit dmpi.duke.edu/duke-single-...

This study maps spatio-temporal gene interactions during #amyloidβ accumulation using #SpatialTranscriptomics, uncovering ligand–receptor dynamics and transcriptional networks of #AlzheimersDisease etiology. @tulanemedicine.bsky.social

#OpenAccess: doi.org/10.1016/j.ge...

Work from the #DukeMGC will be on display at #AGBT2026:

Tuesday 1:30-3:30, poster #401

Wednesday 4:45-6:15, poster #472

Come find us to chat about our data! 🧬

#AGBT #SpatialTranscriptomics #SingleCell #Benchmarking #LongReadSequencing

New research from Jim Whelan's lab and @lewseylab.bsky.social uses @10xgenomics.bsky.social single-cell and Xenium spatial transcriptomics to crack open mitochondrial stress signaling in plants.

#Xenium #10xGenomics #SpatialTranscriptomics #PlantScience

Adrian and Soni hosted a seminar on single-cell and spatial transcriptomics on 16 Feb 2026 at Hannover Medical School, Germany, sharing how these technologies advance genomics and translational research.

#SingleCell #SpatialTranscriptomics #Genomics #NGS #LifeSciences #Novogene

Explore cellular heterogeneity with Novogene's webinar Uncovering Cellular Complexity with Spatial & Single-Cell Transcriptomics. Learn how to integrate spatial & scRNA-seq using 10x GEM-X for novel insights. #SingleCell #SpatialTranscriptomics https://bit.ly/4jc0yyo

#SpatialTranscriptomics

Fibroblasts orchestrate spatial neuroimmune response in 🐭Stroke

Trancranial 4-OHT to label Col1a2-CreER+ fibroblast in dura mater, not leptomeninges/perivascular zone

Fibroblast Tgfbr2 KO
Myeloid Tgfb1 KO
Fibroblast Cxcl12 KO

#Nature 2025
www.nature.com/articles/s41...

Unlocking tissue secrets! ✨ New tool ‘ovrlpy’ reveals hidden folds in cells, fixing errors in vital research. See tissues like never before! 🔬 #SpatialTranscriptomics

Source: phys.org/news/2026-02-software-to...

Cell type-specific responses to #Dapagliflozin in Diabetic arterial wall of db/db🐭

Take a look at this powerful multimodal single-cell dataset
scRNA-seq scATAC-seq Xenium (479 genes) #SpatialTranscriptomics
n=8🐭/group

Rama Natarajan lab #ATVB 2026
www.ahajournals.org/doi/10.1161/...

Spatial transcriptomics with R/Bioconductor 9-13 March 2026

Seats are filling fast for #SpatialTranscriptomics with R/ @bioconductor.bsky.social (9–13 March)! 🚀
Join this 5-day online course to learn state-of-the-art spatial omics analysis with theory, hands-on labs & a hackathon.

www.physalia-courses.org/courses-work...

Does your study require #spatialtranscriptomics?
We have a sample report available demonstrating how #bioinformatics can help!
Request the report today at:
www.fiosgenomics.com/spatial-transcriptomic-a...

DeepSpaceDB
genomics.virus.kyoto-u.ac.jp/deepspacedb/

>2k #SpatialTranscriptomics Visium samples

👉Interactive, downloadable data analysis
👉Cross-sample/Cross-study comparison
👉Analyze your own data
👉Database-wide gene/pathway inquiry

#NucAcidRes 2026
academic.oup.com/nar/article/...

Histology for Spatial Transcriptomics: A Troubleshooting Toolkit Explore and troubleshoot histology workflows for spatial transcriptomics in a collaborative, in-person setting

New for 2026: We're bringing together expertise from across #NorwichResearchPark for a new workshop on Histology for #SpatialTranscriptomics.

📝 Register your interest to hear more!
➡️ buff.ly/UixDjP5

@johninnescentre.bsky.social @quadraminstitute.bsky.social
@thesainsburylab.bsky.social

#SpatialTranscriptomics
Comprehensive mapping of Oral Squamous Cell Carcinoma tumor progression over a 23-wk time course of🐭+4-NQO

cellSpat➡️ spatially co-localized L-R pairs
pypi.org/project/cell...
Sema4a-Plxnb2
Fgf7-Fgfr1
App-Cd74

@jalees.bsky.social bioRxiv 2025
www.biorxiv.org/content/10.1...

Mapping isoforms and regulatory mechanisms from spatial transcriptomics data with SPLISOSM. #SpatialTranscriptomics #Isoforms @natbiotech.nature.com 🧪🧬 🖥️
www.nature.com/articles/s41...