“HAPP: High-accuracy pipeline for processing deep metabarcoding data” from Fredrik Ronquist’s group doi.org/10.1371/jour... #metabarcoding
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#metabarcoding
Posts tagged #metabarcoding on Bluesky
Manuscript link: onlinelibrary.wiley.com/doi/10.1111/... #soil #eDNA #metabarcoding @myco-microbio.bsky.social
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What a wonderful edition of the #eDNA #Metabarcoding workshop!
Huge thanks to @leeselab.bsky.social @tillmacher.bsky.social @dominikbuchner.bsky.social for sharing their expertise, and to our curious, active, and interactive attendees—good luck with your data!
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🦠 Interested in #MicrobialEcology? Want to use #Metabarcoding to identify and characterize bacterial communities and their abundance in your samples?
Join us this March to learn hands-on how to analyse metabarcoding data using #QIIME2 and R!
www.physalia-courses.org/courses-work...
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We’ve kicked off the #eDNA #Metabarcoding workshop with @leeselab.bsky.social , @dominikbuchner.bsky.social , @tillmacher.bsky.social, and a highly international group of attendees working on a variety of exciting projects.
Looking forward to a fun and productive week of learning! 🎉
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This is an interesting example of using citizen science to learn more about the lives of wild pollinators.
#pollinators #citizenscience #metabarcoding
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A striking example of harvesting the power of citizen science to monitor wild pollinators.
#pollinators #bees #wasps #citizenscience #metabarcoding
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5,000 #students across Canada help map the secret lives of solitary cavity-nesting #bees and #wasps.
🐝This study used #community #science & #metabarcoding to reveal hidden insect interactions.
👇See what they found here: doi.org/10.3897/mbmg...
#citizenscience #hymenoptera
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Proud to have contributed to this study now published in PeerJ w Jon Hestetun, @mucofloris.bsky.social and others, where we show how accuracy of #metabarcoding can be improved by selecting and sequencing marker genes (barcdoding) of taxa missing from taxonomic databases.
peerj.com/articles/208...
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🦉 New publication! 🦆
BirT: A Novel Primer Pair for Avian Environmental DNA Metabarcoding
onlinelibrary.wiley.com/doi/10.1002/...
Want to amplify birds from #eDNA samples? This new primer pair is the way to go!
@dirch3.bsky.social, Rachel Empey, Megan Cowperthwaite, Katerina Coveny #metabarcoding
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Registrations are now closed for the #eDNA #metabarcoding workshop
Thanks everyone!
www.physalia-courses.org/courses-work...
#SoldOut
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Ready to dive into #Metabarcoding and #MicrobialEcology?
Join us for a hands-on course — last seats available ⏳🧬
www.physalia-courses.org/courses-work...
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The upcoming edition of the #eDNA #Metabarcoding course is almost full - only 2 seats left.
If interested: www.physalia-courses.org/courses-work...
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Long-read sequencing can revolutionise the way we monitor #biodiversity.
A comprehensive guide for using #ONT & #PacBio for analysis of biodiversity through #eDNA, #metabarcoding, metagenomics
Just published in @methodsinecoevol.bsky.social
besjournals.onlinelibrary.wiley.com/doi/10.1111/...
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💧 Can one water sample reveal marine life?
🐠 Yes! Using metabarcoding, our #BioProtect team at @matisiceland.bsky.social analyses unique "barcodes" in #eDNA to ID multiple species at once.
🔬 Swipe to explore the impact of #metabarcoding on #OceanBiodiversity!
#MissionOcean #EUMissions #HorizonEU
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#OurFridaySeminar: Maëlle Pomiès on #Metabarcoding with long reads #sequencing data of pig fecal #microbiota
🐖 💩 🦠 🧬 📊
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Interested in #eDNA #metabarcoding?
Have a look at our 2 upcoming courses
🧬 Illumina eDNA Metabarcoding (23–27 Feb) www.physalia-courses.org/courses-work...
🧪 Nanopore eDNA Metabarcoding (23–25 Mar) www.physalia-courses.org/courses-work...
Last seats available!
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Hidden diversity of crust-like Sebacinaceae (Sebacinales, Agaricomycetes) in Asia
#Early-divergingspecies
#ectomycorrhiza
#Helvellosebacina
#metabarcoding
#newspecies
#phylogeny
#Sebacina
#Tremelloscypha
imafungus.pensoft.net/article/1684...
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#JJC2026 Arnaud Boisdron (CRBE Toulouse) on characterization of #fungal communities associated with the king oyster #mushroom #Pleurotus eryngii in agropastoral dry grasslands, using environmental DNA #metabarcoding
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🚨 Last seats for #eDNA #Metabarcoding online course!
🗓 23–27 Feb
👨💻 @leeselab.bsky.social @dominikbuchner.bsky.social @tillmacher.bsky.social
Don’t miss this opportunity to deepen your knowledge & connect with the international metabarcoding community!
www.physalia-courses.org/courses-work...
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🧬A nearly 10-year study detects ~40% loss of #biodiversity in the #sea of Cabrera Archipelago and Atlantic Islands National Parks. It applies #metabarcoding as a tool for biodiversity monitoring 🔗www.ceab.csic.es/en/long-term-study-detec...
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Empowering national capacity for DNA-based approach to species identification and biodiversity monitoring
@mbmg.pensoft.net
doi.org/10.3897/arph...
#DNA #metabarcoding #sciencepolicy #biodiversity
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Plant metabarcoding upgrade:
Adding time + place data boosted bumble bee pollen ID by 77.5%. Clearer bee diets, stronger ecology. 🌿🐝
#Metabarcoding #Pollinators
Learn more here: bsapubs.onlinelibrary.wiley.com/doi/10.1002/...
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DNA-based methods like #metabarcoding can transform biodiversity monitoring — but without shared standards, their impact stays limited. Clear recommendations show why quality assurance and harmonised workflows are key for real-world conservation. #LIBresearch
© Adobe Stock, taraki
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eDNA Metabarcoding Course🧬
23–27 February| Online
This course provides a comprehensive introduction to eDNA metabarcoding, guiding participants through the full workflow from raw Illumina data to ecological interpretation.
www.physalia-courses.org/courses-work...
#eDNA #Metabarcoding
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Excited to be learning #Python for #Bioinformatics with @nerc-eof.bsky.social today, building my skills for ecological networks analysis once I have all my #metabarcoding data
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A Novel Fungicide Consortium: Is It Better for Wheat Production and How Does It Affect the Rhizosphere Microbiome?
#16SrRNAgenes
#ITS
#soilbacteria
#soilfungi
#metabarcoding
#NGS
#Chernozem
#wheatdiseases
#WestSiberia
www.mdpi.com/2673-8007/5/...
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Contrasted effects of human pressure on biodiversity in the UK: a multi-taxonomic assessment using airborne environmental DNA vist.ly/4hmmz #eDNA #Metabarcoding
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🧬 Long-read metabarcoding is powerful, but chimera filters can trash good reads. Our new study benchmarks three algorithms on full-length ITS and shows how false positives distort results.
🔗 peerj.com/articles/204...
#Metabarcoding #LongRead #Bioinformatics #Chimeras
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People working with #protists and #fungi might be interested to hear that we in this study sequenced 13.4 mio. eukaryotic rRNA operons from 450 representative samples. #ProtistsOnSky #Metabarcoding
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